Difference between revisions of "YfnD"
| Line 88: | Line 88: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[yfnH]]-[[yfnG]]-[[yfnF]]-[[yfnE]]-[[yfnD]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yfnHGFED.html DBTBS]) |
| − | * '''[[Sigma factor]]:''' [[SigK]] {{PubMed| | + | * '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15383836}}, [[SigE]] (internal promoter in ''[[yfnE]]'' open reading frame) {{PubMed|15383836}}, see [http://dbtbs.hgc.jp/COG/prom/yfnHGFED.html DBTBS] for details) |
| − | * '''Regulation:''' | + | * '''Regulation:''' expressed during sporulation ([[SigK]], [[SigE]]) {{PubMed|15383836}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 117: | Line 117: | ||
=References= | =References= | ||
| − | + | <pubmed> 15383836</pubmed> | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 10:11, 29 August 2009
- Description: unknown
| Gene name | yfnD |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 36 kDa, 5.466 |
| Gene length, protein length | 933 bp, 311 aa |
| Immediate neighbours | yfnE, yfnC |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU07310
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: O31542
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor: SigK PubMed, SigE (internal promoter in yfnE open reading frame) PubMed, see DBTBS for details)
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Patrick Eichenberger, Masaya Fujita, Shane T Jensen, Erin M Conlon, David Z Rudner, Stephanie T Wang, Caitlin Ferguson, Koki Haga, Tsutomu Sato, Jun S Liu, Richard Losick
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.
PLoS Biol: 2004, 2(10);e328
[PubMed:15383836]
[WorldCat.org]
[DOI]
(I p)
