xkdE

xkdE
168

PBSX prophage

Locus
BSU_12590
Molecular weight
56.21 kDa
Isoelectric point
5.17
Protein length
495 aaSequenceBlast
Gene length
1488 bpSequenceBlast
Function
unknown
Product
unknown
Essential
no
E.C.
null
Synonyms
xkdE
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG5518 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,327,195 → 1,328,682
The protein
Protein family
phage portal family (with YqbA, according to UniProt)
Structure
P54325 (AlphaFold)
Expression and Regulation
Operons
Genes
xtmA-xtmB-xkdE-xkdF-xkdG-xkdH-xkdI-xkdJ-xkdK-xkdM-xkdN-xkzB-xkdO-xkdP-xkdQ-xkdR-xkdS-xkdT-xkdU-xkzA-xkdV-xkdW-xkdX-xepA-xhlA-xhlB-xlyA
Description
PubMed
Regulation
expression during spore germination is strongly reduced under conditions of osmotic stress PubMed
Sigma factors
Xpf: sigma factor, PubMed, in xpf regulon
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xtmA→xlyA

2025-03-22 19:13:04

Jstuelk

142

cf834a1eded0c80a87b885b56423c31a910431c3

B52CA80EBED69B6B9017B7E04DFFD42F17910C15

Biological materials
Mutant
GP1171 (ermC) available in the Stülke lab
BKE12590 (ΔxkdE::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_TCTGACTGTTTGGTTGTGCA,  downstream forward: _UP4_TCCTGAAGGGAGGTGAATCA
BKK12590 (ΔxkdE::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_TCTGACTGTTTGGTTGTGCA,  downstream forward: _UP4_TCCTGAAGGGAGGTGAATCA
References
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E77DD93E3CDCA9B81106E6AB0F18513360AAE9DB

Page visits: 3762

Time of last update: 2025-04-12 21:39:45

Author of last update: Melvin.boenninger