yabD

yabD
168

putative metal-dependent hydrolase

Locus
BSU_00390
Molecular weight
29.08 kDa
Isoelectric point
4.81
Protein length
255 aaSequenceBlast
Gene length
768 bpSequenceBlast
Function
unknown
Product
putative metal-dependent hydrolase
Essential
no
Synonyms
yabD
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0084 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
47,706  48,473
The protein
Protein family
Metallo-dependent hydrolases superfamily (according to UniProt)
Structure
2GZX (PDB) (from Staphylococcus aureus, 64% identity)
P37545 (AlphaFold)
Localization
cytoplasm (according to UniProt)
Expression and Regulation
Operons
Genes
metS-yabD
Description
PubMed null
Regulation
repressed under conditions that trigger sporulation (Spo0A) PubMed
Regulatory mechanism
Spo0A: repression, PubMed, in spo0A regulon
Additional information
term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of metS PubMed
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metS→yabD

2025-03-16 12:49:25

Jstuelk

72

8ca1bbc067765c91c7da7f4f4ed3d0aa9caba36e

4F14621DA97D6D58D4492DEB992381F4E9551CCD

Biological materials
Mutant
MGNA-B904 (yabD::erm), available at the NBRP B. subtilis, Japan
BKE00390 (yabD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATAAGTGAAAAACTCCTTT,  downstream forward: _UP4_TGACAAAAAACGCTAGCGGG
BKK00390 (yabD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATAAGTGAAAAACTCCTTT,  downstream forward: _UP4_TGACAAAAAACGCTAGCGGG
References
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00798BB5A769C464CC5FDDF7D9E41D30B473B9A8

Page visits: 3078

Time of last update: 2025-04-09 16:08:08

Author of last update: Jstuelk