yocD

yocD
168

similar to immunity to bacteriotoxins

Locus
BSU_19170
Molecular weight
36.25 kDa
Isoelectric point
5.58
Protein length
325 aaSequenceBlast
Gene length
978 bpSequenceBlast
Function
unknown
Product
unknown
Essential
no
E.C.
null
Synonyms
yocD
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1619 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,088,257  2,089,234
The protein
Protein family
peptidase S66 family (with YkfA, according to UniProt)
Structure
3SR3 (PDB) (MccF from B. anthracis, 33% identity, 66% similarity)
O35046 (AlphaFold)
Expression and Regulation
Operons
Genes
yocC-yocD
Description
PubMed
Open in new tab

yocC→yocD

2025-04-06 20:14:38

Jstuelk

81

248b4111f479830b927a9fe39ee72f36f599072b

78FB85CC53240CE12B3EAC895D7122F2827CF6DD

Genes
yocD
Description
PubMed
Regulatory mechanism
AbrB: repression, PubMed, in abrB regulon
Open in new tab

yocD

2025-04-06 20:13:48

Bzhu

89

fd834e674f1b7d6031b3ba46da2d99047fa1e876

88D0EFF2B434EE1B20CFAFAF117247A5F596D863

Biological materials
Mutant
MGNA-B413 (yocD::erm), available at the NBRP B. subtilis, Japan
BKE19170 (yocD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATAGAACCCTCCATCAATG,  downstream forward: _UP4_TAATCAGCTTGTAAATTTTT
BKK19170 (yocD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATAGAACCCTCCATCAATG,  downstream forward: _UP4_TAATCAGCTTGTAAATTTTT
References
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6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629

Page visits: 2445

Time of last update: 2025-04-09 17:58:01

Author of last update: Melvin.boenninger