Difference between revisions of "RNases"
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===RNases are involved in the processing and degradation of the different classes of mRNAs, tRNAs, rRNAs and [[small RNAs]]=== | ===RNases are involved in the processing and degradation of the different classes of mRNAs, tRNAs, rRNAs and [[small RNAs]]=== | ||
| + | {{CategoryTree | ||
| + | |Parents= | ||
| + | * 3. [[Information processing]] | ||
| + | ** 3.2. [[RNA synthesis and degradation]] | ||
| + | |Neighbours= | ||
| + | * 3.2.1. [[Transcription]] | ||
| + | * 3.2.2. [[RNA chaperones]] | ||
| + | * 3.2.3. [[DEAD-box RNA helicases]] | ||
| + | * 3.2.4. [[RNases]] | ||
| + | |Related= | ||
| + | [[RNA degradosome]] | ||
| + | |}} | ||
| + | |||
| + | __TOC__ | ||
| + | <br><br><br> | ||
| + | |||
==Exoribonucleases== | ==Exoribonucleases== | ||
| − | * [[rnjA|RNase J1]]: 5'-3' | + | * [[rnjA|RNase J1]]: 5'-3' activity |
* [[rph|RNase PH]]: 3'-5' activity | * [[rph|RNase PH]]: 3'-5' activity | ||
| Line 13: | Line 29: | ||
==Endoribonucleases== | ==Endoribonucleases== | ||
| − | |||
| − | |||
| − | |||
* [[rny|RNase Y]]: ssRNA endonuclease | * [[rny|RNase Y]]: ssRNA endonuclease | ||
* [[rnpA|RNase P]]: ssRNA endonuclease | * [[rnpA|RNase P]]: ssRNA endonuclease | ||
* [[rnz|RNase Z]]: ssRNA endonuclease | * [[rnz|RNase Z]]: ssRNA endonuclease | ||
| − | |||
* [[ndoA|RNase Endo A]] | * [[ndoA|RNase Endo A]] | ||
| − | |||
* [[rnhB|RNase HII]]: cleaves RNA in RNA-DNA hybrids | * [[rnhB|RNase HII]]: cleaves RNA in RNA-DNA hybrids | ||
* [[rnhC|RNase HIII]]: cleaves RNA in RNA-DNA hybrids | * [[rnhC|RNase HIII]]: cleaves RNA in RNA-DNA hybrids | ||
| − | |||
* [[yurI|RNase Bsn]]: extracellular RNase | * [[yurI|RNase Bsn]]: extracellular RNase | ||
| − | |||
* [[rnc|RNase III]]: dsRNA endonuclease | * [[rnc|RNase III]]: dsRNA endonuclease | ||
* [[mrnC|mini-III]]: dsRNA endonuclease | * [[mrnC|mini-III]]: dsRNA endonuclease | ||
* [[rnmV|RNase M5]]: dsRNA endonuclease | * [[rnmV|RNase M5]]: dsRNA endonuclease | ||
| + | |||
| + | == RNA pyrophosphohydrolase == | ||
| + | * [[RppH]] | ||
| + | |||
| + | ==Unknown activity== | ||
| + | * [[rnjB|RNase J2]]: similar to and interacting with [[rnjA|RNase J1]], but does not seem to have an own RNase activity | ||
| + | * [[YpdQ]]: similar to RNase HI | ||
| + | * [[YrrK]]: processing of the 5' end of pre-[[16S rRNA]] | ||
| + | * [[YqfG]]: putative endoribonuclease, important for rRNA maturation | ||
| + | |||
| + | ==Labs working on RNases== | ||
| + | * [[David Bechhofer]] | ||
| + | * [[Ciaran Condon]] | ||
| + | * [[Harald Putzer]] | ||
| + | * [[Jörg Stülke]] | ||
| + | |||
| + | ==Key original publications== | ||
| + | <pubmed> 12884008 22537947 25099370 </pubmed> | ||
==Reviews on RNases in ''Bacillus subtilis''== | ==Reviews on RNases in ''Bacillus subtilis''== | ||
| − | <pubmed> 19215774 12794188 12490701 </pubmed> | + | <pubmed>21334965 19767421 21976285 22550495 19215774 12794188 12490701 20659169 23403287,21957024 22568516 24064983 25292357 25878039</pubmed> |
| + | |||
| + | =Back to [[categories]]= | ||
Latest revision as of 10:25, 2 January 2017
RNases are involved in the processing and degradation of the different classes of mRNAs, tRNAs, rRNAs and small RNAs
| Parent categories | |
| Neighbouring categories |
|
| Related categories | |
Contents
- 1 RNases are involved in the processing and degradation of the different classes of mRNAs, tRNAs, rRNAs and small RNAs
- 2 Exoribonucleases
- 3 Endoribonucleases
- 4 RNA pyrophosphohydrolase
- 5 Unknown activity
- 6 Labs working on RNases
- 7 Key original publications
- 8 Reviews on RNases in Bacillus subtilis
- 9 Back to categories
Exoribonucleases
- RNase J1: 5'-3' activity
- RNase PH: 3'-5' activity
- YhaM: 3'-5' activity
- RNase R: 3'-5' activity
- polynucleotide phosphorylase: 3'-5' activity
- nano-RNase A: degrades oligonucleotides
- nano-RNase B: degrades oligonucleotides
Endoribonucleases
- RNase Y: ssRNA endonuclease
- RNase P: ssRNA endonuclease
- RNase Z: ssRNA endonuclease
- RNase Endo A
- RNase HII: cleaves RNA in RNA-DNA hybrids
- RNase HIII: cleaves RNA in RNA-DNA hybrids
- RNase Bsn: extracellular RNase
- RNase III: dsRNA endonuclease
- mini-III: dsRNA endonuclease
- RNase M5: dsRNA endonuclease
RNA pyrophosphohydrolase
Unknown activity
- RNase J2: similar to and interacting with RNase J1, but does not seem to have an own RNase activity
- YpdQ: similar to RNase HI
- YrrK: processing of the 5' end of pre-16S rRNA
- YqfG: putative endoribonuclease, important for rRNA maturation
Labs working on RNases
Key original publications
Bo Liu, Gintaras Deikus, Anna Bree, Sylvain Durand, Daniel B Kearns, David H Bechhofer
Global analysis of mRNA decay intermediates in Bacillus subtilis wild-type and polynucleotide phosphorylase-deletion strains.
Mol Microbiol: 2014, 94(1);41-55
[PubMed:25099370]
[WorldCat.org]
[DOI]
(I p)
Simen M Kristoffersen, Chad Haase, M Ryan Weil, Karla D Passalacqua, Faheem Niazi, Stephen K Hutchison, Brian Desany, Anne-Brit Kolstø, Nicolas J Tourasse, Timothy D Read, Ole Andreas Økstad
Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium.
Genome Biol: 2012, 13(4);R30
[PubMed:22537947]
[WorldCat.org]
[DOI]
(I e)
G Hambraeus, C von Wachenfeldt, L Hederstedt
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs.
Mol Genet Genomics: 2003, 269(5);706-14
[PubMed:12884008]
[WorldCat.org]
[DOI]
(P p)
Reviews on RNases in Bacillus subtilis
Murray P Deutscher
How bacterial cells keep ribonucleases under control.
FEMS Microbiol Rev: 2015, 39(3);350-61
[PubMed:25878039]
[WorldCat.org]
[DOI]
(I p)
Monica P Hui, Patricia L Foley, Joel G Belasco
Messenger RNA degradation in bacterial cells.
Annu Rev Genet: 2014, 48;537-59
[PubMed:25292357]
[WorldCat.org]
[DOI]
(I p)
Soumaya Laalami, Léna Zig, Harald Putzer
Initiation of mRNA decay in bacteria.
Cell Mol Life Sci: 2014, 71(10);1799-828
[PubMed:24064983]
[WorldCat.org]
[DOI]
(I p)
Zbigniew Dominski, Agamemnon J Carpousis, Béatrice Clouet-d'Orval
Emergence of the β-CASP ribonucleases: highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation.
Biochim Biophys Acta: 2013, 1829(6-7);532-51
[PubMed:23403287]
[WorldCat.org]
[DOI]
(P p)
Martin Lehnik-Habrink, Richard J Lewis, Ulrike Mäder, Jörg Stülke
RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases.
Mol Microbiol: 2012, 84(6);1005-17
[PubMed:22568516]
[WorldCat.org]
[DOI]
(I p)
Brian C Jester, Pascale Romby, Efthimia Lioliou
When ribonucleases come into play in pathogens: a survey of gram-positive bacteria.
Int J Microbiol: 2012, 2012;592196
[PubMed:22550495]
[WorldCat.org]
[DOI]
(I p)
Inês Jesus Silva, Margarida Saramago, Clémentine Dressaire, Susana Domingues, Sandra Cristina Viegas, Cecília Maria Arraiano
Importance and key events of prokaryotic RNA decay: the ultimate fate of an RNA molecule.
Wiley Interdiscip Rev RNA: 2011, 2(6);818-36
[PubMed:21976285]
[WorldCat.org]
[DOI]
(I p)
David H Bechhofer
Bacillus subtilis mRNA decay: new parts in the toolkit.
Wiley Interdiscip Rev RNA: 2011, 2(3);387-94
[PubMed:21957024]
[WorldCat.org]
[DOI]
(I p)
Ciarán Condon, David H Bechhofer
Regulated RNA stability in the Gram positives.
Curr Opin Microbiol: 2011, 14(2);148-54
[PubMed:21334965]
[WorldCat.org]
[DOI]
(I p)
Cecília M Arraiano, José M Andrade, Susana Domingues, Inês B Guinote, Michal Malecki, Rute G Matos, Ricardo N Moreira, Vânia Pobre, Filipa P Reis, Margarida Saramago, Inês J Silva, Sandra C Viegas
The critical role of RNA processing and degradation in the control of gene expression.
FEMS Microbiol Rev: 2010, 34(5);883-923
[PubMed:20659169]
[WorldCat.org]
[DOI]
(I p)
Flore Sinturel, Olivier Pellegrini, Song Xiang, Liang Tong, Ciarán Condon, Lionel Bénard
Real-time fluorescence detection of exoribonucleases.
RNA: 2009, 15(11);2057-62
[PubMed:19767421]
[WorldCat.org]
[DOI]
(I p)
David H Bechhofer
Messenger RNA decay and maturation in Bacillus subtilis.
Prog Mol Biol Transl Sci: 2009, 85;231-73
[PubMed:19215774]
[WorldCat.org]
[DOI]
(P p)
Ciarán Condon
RNA processing and degradation in Bacillus subtilis.
Microbiol Mol Biol Rev: 2003, 67(2);157-74, table of contents
[PubMed:12794188]
[WorldCat.org]
[DOI]
(P p)
Ciarán Condon, Harald Putzer
The phylogenetic distribution of bacterial ribonucleases.
Nucleic Acids Res: 2002, 30(24);5339-46
[PubMed:12490701]
[WorldCat.org]
[DOI]
(I p)
