Difference between revisions of "Sandbox"

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* '''Description:''' thiamine pyrophosphokinase <br/><br/>
+
* '''Description:''' L-serine deaminase <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yloS''
+
|''sdaAB''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''thiN ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yloW, sdaA ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || thiamine pyrophosphokinase
+
|style="background:#ABCDEF;" align="center"| '''Product''' || L-serine deaminase (beta chain)
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || thiamine salvage
+
|style="background:#ABCDEF;" align="center"|'''Function''' || serine utilization
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.216  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.103  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 642 bp, 214 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 660 bp, 220 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rpe]]'', ''[[spoVM]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yloV]]'', ''[[sdaAA]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13453&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13458&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yloS_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:sdaAB_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 43: Line 43:
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13394]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13397]
  
 
=== Additional information===
 
=== Additional information===
Line 54: Line 54:
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:''' thiamine pyrophosphokinase family (according to Swiss-Prot)
+
* '''Protein family:''' ACT domain (according to Swiss-Prot)
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
Line 78: Line 78:
 
* '''Structure:'''
 
* '''Structure:'''
  
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34664 O34664]
+
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34635 O34635]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU15800]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU15850]
  
* '''E.C. number:''' [http://www.expasy.org/enzyme/2.7.6.2 2.7.6.2]
+
* '''E.C. number:''' [http://www.expasy.org/enzyme/4.3.1.17 4.3.1.17]
  
 
=== Additional information===
 
=== Additional information===

Revision as of 23:03, 11 May 2009

  • Description: L-serine deaminase

Gene name sdaAB
Synonyms yloW, sdaA
Essential no
Product L-serine deaminase (beta chain)
Function serine utilization
MW, pI 23 kDa, 5.103
Gene length, protein length 660 bp, 220 aa
Immediate neighbours yloV, sdaAA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
SdaAB context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ACT domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed