Difference between revisions of "Sandbox"

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* '''Description:''' ribulose 5-phosphate 3-epimerase <br/><br/>
+
* '''Description:''' thiamine pyrophosphokinase <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''rpe''
+
|''yloS''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yloR ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''thiN ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || ribulose 5-phosphate 3-epimerase
+
|style="background:#ABCDEF;" align="center"| '''Product''' || thiamine pyrophosphokinase
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || pentose phosphate pathway
+
|style="background:#ABCDEF;" align="center"|'''Function''' || thiamine salvage
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.651  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.216  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 651 bp, 217 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 642 bp, 214 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cpgA]]'', ''[[yloS]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rpe]]'', ''[[spoVM]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13452&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13453&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:rpe_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:yloS_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 43: Line 43:
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13393]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13394]
  
 
=== Additional information===
 
=== Additional information===
Line 54: Line 54:
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:''' ribulose-phosphate 3-epimerase family (according to Swiss-Prot)
+
* '''Protein family:''' thiamine pyrophosphokinase family (according to Swiss-Prot)
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
Line 78: Line 78:
 
* '''Structure:'''
 
* '''Structure:'''
  
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34557 O34557]
+
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34664 O34664]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU15790]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU15800]
  
* '''E.C. number:''' [http://www.expasy.org/enzyme/5.1.3.1 5.1.3.1]
+
* '''E.C. number:''' [http://www.expasy.org/enzyme/2.7.6.2 2.7.6.2]
  
 
=== Additional information===
 
=== Additional information===

Revision as of 23:03, 11 May 2009

  • Description: thiamine pyrophosphokinase

Gene name yloS
Synonyms thiN
Essential no
Product thiamine pyrophosphokinase
Function thiamine salvage
MW, pI 23 kDa, 5.216
Gene length, protein length 642 bp, 214 aa
Immediate neighbours rpe, spoVM
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YloS context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: thiamine pyrophosphokinase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed