Difference between revisions of "YoaJ"
| Line 38: | Line 38: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | |||
| + | strongly reduced ability to colonize maize roots [http://www.ncbi.nlm.nih.gov/sites/entrez/18971341 PubMed] | ||
=== Database entries === | === Database entries === | ||
| Line 54: | Line 56: | ||
* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | * '''Protein family:''' | + | * '''Protein family:''' expansin [http://www.ncbi.nlm.nih.gov/sites/entrez/18971341 PubMed] |
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
| Line 72: | Line 74: | ||
* '''Interactions:''' | * '''Interactions:''' | ||
| − | * '''Localization:''' | + | * '''Localization:''' extracellular [http://www.ncbi.nlm.nih.gov/sites/entrez/18971341 PubMed] |
=== Database entries === | === Database entries === | ||
| − | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3D3O 3D3O] | + | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3D3O 3D3O] [http://www.ncbi.nlm.nih.gov/sites/entrez/18971341 PubMed] |
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34918 O34918] | * '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34918 O34918] | ||
Revision as of 17:54, 7 May 2009
- Description: similar to extracellular endoglucanase precursor
| Gene name | yoaJ |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 25 kDa, 9.447 |
| Gene length, protein length | 696 bp, 232 aa |
| Immediate neighbours | yoaI, yoaK |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
strongly reduced ability to colonize maize roots PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: expansin PubMed
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: extracellular PubMed
Database entries
- Swiss prot entry: O34918
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
