|
|
Line 1: |
Line 1: |
− | * '''Description:''' seryl-tRNA-synthetase <br/><br/>
| |
| | | |
− | {| align="right" border="1" cellpadding="2"
| |
− | |-
| |
− | |style="background:#ABCDEF;" align="center"|'''Gene name'''
| |
− | |''serS''
| |
− | |-
| |
− | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
| |
− | |-
| |
− | |style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
| |
− | |-
| |
− | |style="background:#ABCDEF;" align="center"| '''Product''' || seryl-tRNA-synthetase
| |
− | |-
| |
− | |style="background:#ABCDEF;" align="center"|'''Function''' || translation
| |
− | |-
| |
− | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 5.193
| |
− | |-
| |
− | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1275 bp, 425 aa
| |
− | |-
| |
− | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pdxT]]'', ''[[trnSL-Ser1]]''
| |
− | |-
| |
− | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB11789]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
| |
− | |-
| |
− | |colspan="2" | '''Genetic context''' <br/> [[Image:serS_context.gif]]
| |
− | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
| |
− | |-
| |
− | |}
| |
− |
| |
− | __TOC__
| |
− |
| |
− | <br/><br/>
| |
− |
| |
− | =The gene=
| |
− |
| |
− | === Basic information ===
| |
− |
| |
− | * '''Coordinates:'''
| |
− |
| |
− | ===Phenotypes of a mutant ===
| |
− |
| |
− | essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
| |
− |
| |
− | === Database entries ===
| |
− |
| |
− | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/serS.html]
| |
− |
| |
− | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10077]
| |
− |
| |
− | === Additional information===
| |
− |
| |
− |
| |
− | =The protein=
| |
− |
| |
− | === Basic information/ Evolution ===
| |
− |
| |
− | * '''Catalyzed reaction/ biological activity:'''
| |
− |
| |
− | * '''Protein family:'''
| |
− |
| |
− | * '''Paralogous protein(s):'''
| |
− |
| |
− | === Extended information on the protein ===
| |
− |
| |
− | * '''Kinetic information:'''
| |
− |
| |
− | * '''Domains:'''
| |
− |
| |
− | * '''Modification:'''
| |
− |
| |
− | * '''Cofactor(s):'''
| |
− |
| |
− | * '''Effectors of protein activity:'''
| |
− |
| |
− | * '''Interactions:'''
| |
− |
| |
− | * '''Localization:''' Cytoplasm
| |
− |
| |
− | === Database entries ===
| |
− |
| |
− | * '''Structure:'''
| |
− |
| |
− | * '''Swiss prot entry:'''
| |
− |
| |
− | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU00130]
| |
− |
| |
− | * '''E.C. number:'''
| |
− |
| |
− | === Additional information===
| |
− |
| |
− | =Expression and regulation=
| |
− |
| |
− | * '''Operon:''' ''serS'' [http://www.ncbi.nlm.nih.gov/sites/entrez/8915527 PubMed]
| |
− |
| |
− | * '''[[Sigma factor]]:'''
| |
− |
| |
− | * '''Regulation:''' induced in the presence of serine [http://www.ncbi.nlm.nih.gov/sites/entrez/8915527 PubMed]
| |
− |
| |
− | * '''Regulatory mechanism:''' antitermination by a ''[[trnD-Ser]]-''dependent RNA switch [http://www.ncbi.nlm.nih.gov/sites/entrez/8915527 PubMed]
| |
− |
| |
− | * '''Additional information:'''
| |
− |
| |
− | =Biological materials =
| |
− |
| |
− | * '''Mutant:'''
| |
− |
| |
− | * '''Expression vector:'''
| |
− |
| |
− | * '''lacZ fusion:'''
| |
− |
| |
− | * '''GFP fusion:'''
| |
− |
| |
− | * '''two-hybrid system:'''
| |
− |
| |
− | * '''Antibody:'''
| |
− |
| |
− | =Labs working on this gene/protein=
| |
− |
| |
− | =Your additional remarks=
| |
− |
| |
− | =References=
| |
− |
| |
− | # Condon et al. (1996) Aminoacyl-tRNA synthetase gene regulation in ''Bacillus subtilis''.
| |
− | ''Biochimie'' '''78:''' 381-389. [http://www.ncbi.nlm.nih.gov/sites/entrez/8915527 PubMed]
| |