Difference between revisions of "Sandbox"

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* '''Description:''' seryl-tRNA-synthetase <br/><br/>
 
  
{| align="right" border="1" cellpadding="2"
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|''serS''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || seryl-tRNA-synthetase
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 5.193 
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1275 bp, 425 aa
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pdxT]]'', ''[[trnSL-Ser1]]''
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11789&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:serS_context.gif]]
 
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|}
 
 
__TOC__
 
 
<br/><br/>
 
 
=The gene=
 
 
=== Basic information ===
 
 
* '''Coordinates:'''
 
 
===Phenotypes of a mutant ===
 
 
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
 
 
=== Database entries ===
 
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/serS.html]
 
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10077]
 
 
=== Additional information===
 
 
 
=The protein=
 
 
=== Basic information/ Evolution ===
 
 
* '''Catalyzed reaction/ biological activity:'''
 
 
* '''Protein family:'''
 
 
* '''Paralogous protein(s):'''
 
 
=== Extended information on the protein ===
 
 
* '''Kinetic information:'''
 
 
* '''Domains:'''
 
 
* '''Modification:'''
 
 
* '''Cofactor(s):'''
 
 
* '''Effectors of protein activity:'''
 
 
* '''Interactions:'''
 
 
* '''Localization:''' Cytoplasm
 
 
=== Database entries ===
 
 
* '''Structure:'''
 
 
* '''Swiss prot entry:'''
 
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU00130]
 
 
* '''E.C. number:'''
 
 
=== Additional information===
 
 
=Expression and regulation=
 
 
* '''Operon:''' ''serS'' [http://www.ncbi.nlm.nih.gov/sites/entrez/8915527 PubMed]
 
 
* '''[[Sigma factor]]:'''
 
 
* '''Regulation:''' induced in the presence of serine [http://www.ncbi.nlm.nih.gov/sites/entrez/8915527 PubMed]
 
 
* '''Regulatory mechanism:''' antitermination by a ''[[trnD-Ser]]-''dependent RNA switch [http://www.ncbi.nlm.nih.gov/sites/entrez/8915527 PubMed]
 
 
* '''Additional information:'''
 
 
=Biological materials =
 
 
* '''Mutant:'''
 
 
* '''Expression vector:'''
 
       
 
* '''lacZ fusion:'''
 
 
* '''GFP fusion:'''
 
 
* '''two-hybrid system:'''
 
 
* '''Antibody:'''
 
 
=Labs working on this gene/protein=
 
 
=Your additional remarks=
 
 
=References=
 
 
# Condon et al. (1996) Aminoacyl-tRNA synthetase gene regulation in ''Bacillus subtilis''.
 
''Biochimie'' '''78:''' 381-389. [http://www.ncbi.nlm.nih.gov/sites/entrez/8915527 PubMed]
 

Revision as of 22:08, 21 April 2009