Difference between revisions of "Sandbox"

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#REDIRECT [[NatR]]
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* '''Description:''' Na+ ABC transporter (export) (ATP-binding protein) <br/><br/>
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{| align="right" border="1" cellpadding="2"
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|-
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''natA''
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|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|-
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || Na+ ABC transporter (export) (ATP-binding protein)
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|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || sodium export
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|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 8.799 
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|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 738 bp, 246 aa
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|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[natR]]'', ''[[natB]]''
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|-
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12829&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:natA_context.gif]]
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|-
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|}
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__TOC__
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<br/><br/><br/>
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=The gene=
 +
 
 +
=== Basic information ===
 +
 
 +
* '''Coordinates:'''
 +
 
 +
===Phenotypes of a mutant ===
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 +
=== Database entries ===
 +
 
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* '''DBTBS entry:''' no entry
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11338]
 +
 
 +
=== Additional information===
 +
 
 +
 
 +
=The protein=
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 +
=== Basic information/ Evolution ===
 +
 
 +
* '''Catalyzed reaction/ biological activity:'''
 +
 
 +
* '''Protein family:''' ABC transporter domain
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* '''Paralogous protein(s):'''
 +
 
 +
=== Extended information on the protein ===
 +
 
 +
* '''Kinetic information:'''
 +
 
 +
* '''Domains:'''
 +
 
 +
* '''Modification:'''
 +
 
 +
* '''Cofactor(s):'''
 +
 
 +
* '''Effectors of protein activity:'''
 +
 
 +
* '''Interactions:'''
 +
 
 +
* '''Localization:'''
 +
 
 +
=== Database entries ===
 +
 
 +
* '''Structure:'''
 +
 
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* '''Swiss prot entry:'''
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU02750]
 +
 
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* '''E.C. number:'''
 +
 
 +
=== Additional information===
 +
 
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=Expression and regulation=
 +
 
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* '''Operon:'''
 +
 
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* '''[[Sigma factor]]:'''
 +
 
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* '''Regulation:'''
 +
 
 +
* '''Regulatory mechanism:'''
 +
 
 +
* '''Additional information:'''
 +
 
 +
=Biological materials =
 +
 
 +
* '''Mutant:'''
 +
 
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* '''Expression vector:'''
 +
       
 +
* '''lacZ fusion:'''
 +
 
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* '''GFP fusion:'''
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* '''two-hybrid system:'''
 +
 
 +
* '''Antibody:'''
 +
 
 +
=Labs working on this gene/protein=
 +
 
 +
=Your additional remarks=
 +
 
 +
=References=
 +
 
 +
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 17:44, 21 April 2009

  • Description: Na+ ABC transporter (export) (ATP-binding protein)

Gene name natA
Synonyms
Essential no
Product Na+ ABC transporter (export) (ATP-binding protein)
Function sodium export
MW, pI 27 kDa, 8.799
Gene length, protein length 738 bp, 246 aa
Immediate neighbours natR, natB
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
NatA context.gif
This image was kindly provided by SubtiList




The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC transporter domain
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed