Difference between revisions of "Sandbox"

From SubtiWiki
Jump to: navigation, search
(Blanked the page)
Line 1: Line 1:
* '''Description:''' similar to cell wall binding protein <br/><br/>
 
  
{| align="right" border="1" cellpadding="2"
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|''yabE''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 9.282 
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1311 bp, 437 aa
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabD]]'', ''[[rnmV]]''
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11816&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yabE_context.gif]]
 
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|}
 
 
__TOC__
 
 
<br/><br/>
 
 
=The gene=
 
 
=== Basic information ===
 
 
* '''Coordinates:'''
 
 
===Phenotypes of a mutant ===
 
 
=== Database entries ===
 
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yabE.html]
 
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10103]
 
 
=== Additional information===
 
 
 
=The protein=
 
 
=== Basic information/ Evolution ===
 
 
* '''Catalyzed reaction/ biological activity:'''
 
 
* '''Protein family:'''
 
 
* '''Paralogous protein(s):'''
 
 
=== Extended information on the protein ===
 
 
* '''Kinetic information:'''
 
 
* '''Domains:''' contains a SPS domain
 
 
* '''Modification:'''
 
 
* '''Cofactor(s):'''
 
 
* '''Effectors of protein activity:'''
 
 
* '''Interactions:'''
 
 
* '''Localization:'''
 
 
=== Database entries ===
 
 
* '''Structure:'''
 
 
* '''Swiss prot entry:'''
 
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU00400]
 
 
* '''E.C. number:'''
 
 
=== Additional information===
 
 
=Expression and regulation=
 
 
* '''Operon:''' ''yabE'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
 
 
* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
 
 
* '''Regulation:'''
 
 
* '''Regulatory mechanism:'''
 
 
* '''Additional information:''' expression is negatively controlled by a cis-acting antisense RNA that is dependent on [[SigX]] and [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
 
 
=Biological materials =
 
 
* '''Mutant:'''
 
 
* '''Expression vector:'''
 
       
 
* '''lacZ fusion:'''
 
 
* '''GFP fusion:'''
 
 
* '''two-hybrid system:'''
 
 
* '''Antibody:'''
 
 
=Labs working on this gene/protein=
 
[[John Helmann]], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]
 
 
=Your additional remarks=
 
 
=References=
 
 
# Eiamphungporn W, Helmann JD (2009) Extracytoplasmic function [[sigma factor]]s regulate expression of the ''Bacillus subtilis yabE'' gene via a cis-acting antisense RNA. ''J. Bacteriol.'' '''191:''' 1101-1105. [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
 

Revision as of 17:25, 21 April 2009