Difference between revisions of "Sandbox"

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* '''Description:''' two-component sensor kinase, regulation of bceA-bceB in response to bacitracin <br/><br/>
+
* '''Description:''' bacitracin ABC transporter (ATP-binding protein) for bacitracin export <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ytsB''
+
|''ytsC''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''bceS ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''bceA ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || two-component sensor kinase (OmpR family)  
+
|style="background:#ABCDEF;" align="center"| '''Product''' || bacitracin ABC transporter (ATP-binding protein)  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of bceA-bceB in response to bacitracin
+
|style="background:#ABCDEF;" align="center"|'''Function''' || bacitracin export
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 38 kDa, 5.939  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 9.287  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1002 bp, 334 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 759 bp, 253 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bceA]]'', ''[[bceR]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bceB]]'', ''[[bceS]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ytsB_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:ytsC_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 41: Line 41:
 
=== Database entries ===
 
=== Database entries ===
  
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/bceRS.html]
+
* '''DBTBS entry:''' no entry
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13919]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13920]
  
 
=== Additional information===
 
=== Additional information===
Line 64: Line 64:
 
* '''Domains:'''  
 
* '''Domains:'''  
  
* '''Modification:''' two transmembrane segments, C-terminal histidine phosphotransferase domain
+
* '''Modification:'''
  
 
* '''Cofactor(s):'''
 
* '''Cofactor(s):'''
Line 80: Line 80:
 
* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU30390]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU30380]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''

Revision as of 18:10, 15 April 2009

  • Description: bacitracin ABC transporter (ATP-binding protein) for bacitracin export

Gene name ytsC
Synonyms bceA
Essential no
Product bacitracin ABC transporter (ATP-binding protein)
Function bacitracin export
MW, pI 28 kDa, 9.287
Gene length, protein length 759 bp, 253 aa
Immediate neighbours bceB, bceS
Hier soll was neues rein
Genetic context
YtsC context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Thorsten Mascher, Karlsruhe Institute of Technology, Germany link

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed