Difference between revisions of "Sandbox"

From SubtiWiki
Jump to: navigation, search
Line 4: Line 4:
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''mrpD''
+
|''mrpC''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yufD ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yufV ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]  
Line 14: Line 14:
 
|style="background:#ABCDEF;" align="center"|'''Function''' || sodium export
 
|style="background:#ABCDEF;" align="center"|'''Function''' || sodium export
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 53 kDa, 9.488  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 6.475  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1479 bp, 493 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 339 bp, 113 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mrpC]]'', ''[[mrpE]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mrpB]]'', ''[[mrpD]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
Line 24: Line 24:
 
|-
 
|-
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:mrpD_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:mrpC_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 31: Line 31:
 
__TOC__
 
__TOC__
  
<br/><br/><br/><br/>
+
<br/><br/>
  
 
=The gene=
 
=The gene=
Line 47: Line 47:
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/mrpABCDEFG.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/mrpABCDEFG.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12345]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12357]
  
 
=== Additional information===
 
=== Additional information===
Line 84: Line 84:
 
* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU31630]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU31620]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''

Revision as of 15:01, 15 April 2009

  • Description: Na+/H+ antiporter subunit, multiple resistance and pH homeostasis

Gene name mrpC
Synonyms yufV
Essential yes PubMed
Product Na+/H+ antiporter subunit
Function sodium export
MW, pI 12 kDa, 6.475
Gene length, protein length 339 bp, 113 aa
Immediate neighbours mrpB, mrpD
Hier soll was neues rein
Genetic context
MrpC context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed