Difference between revisions of "CggR"
(New page: * '''Description:''' write here <br/><br/> {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''genE'' |- |style="background:#ABC...) |
(→Expression and regulation) |
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* '''Operon:''' | * '''Operon:''' | ||
+ | ** ''[[cggR]]-[[gapA]]-[[pgk]]-[[tpiA]]-[[pgm]]-[[eno]]'' | ||
+ | ** ''[[cggR]]-[[gapA]]'' | ||
− | + | The primary mRNAs of the operon are highly unstable. The primary mRNA is subject to processing at the very end of the ''[[cggR]]'' open reading frame. This results in stable mature ''[[gapA]]'' and ''[[gapA]]-[[pgk]]-[[tpiA]]-[[pgm]]-[[eno]]'' mRNAs. The processing event requires the [[Rny]] protein. | |
− | * ''' | + | * '''Sigma factor:''' SigA |
− | * ''' | + | * '''Regulation:''' [[CggR]] represses the operon in the absence of glycolytic sugars |
− | * '''Additional information:''' | + | * '''Regulatory mechanism:''' repression |
+ | |||
+ | * '''Database entries:''' [http://dbtbs.hgc.jp/COG/prom/cggR-gapA-pgk-tpiA-pgm-eno.html DBTBS] | ||
+ | |||
+ | * '''Additional information:''' | ||
=Biological materials = | =Biological materials = |
Revision as of 17:36, 17 December 2008
- Description: write here
Gene name | genE |
Synonyms | |
Essential | write here |
Product | write here |
Function | write here |
MW, pI | xx,x kDa, y.yy |
Gene length, protein length | aaa bp, bbb amino acids |
Immediate neighbours | genA, genB |
Gene sequence (+200bp) | Protein sequence |
Genetic context File:GenE context.gif |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry:
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
The primary mRNAs of the operon are highly unstable. The primary mRNA is subject to processing at the very end of the cggR open reading frame. This results in stable mature gapA and gapA-pgk-tpiA-pgm-eno mRNAs. The processing event requires the Rny protein.
- Sigma factor: SigA
- Regulation: CggR represses the operon in the absence of glycolytic sugars
- Regulatory mechanism: repression
- Database entries: DBTBS
- Additional information:
Biological materials
Labs working on this gene/protein
Your additional remarks
References
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed