Difference between revisions of "Stusti 2018"

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= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas =
 
= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas =
  
−
==  What makes RNA such a special molecule – specific chemical and structural features of RNA ==
+
==  What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl ==
 
<pubmed>  21930584</pubmed>
 
<pubmed>  21930584</pubmed>
  
−
== RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair ==
+
== RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner ==
 
<pubmed>  24219496 8156586 28979293 26109351</pubmed>
 
<pubmed>  24219496 8156586 28979293 26109351</pubmed>
  
−
== Ribozymes (catalytically active RNAs) (Intro)==
+
== Ribozymes (catalytically active RNAs: Christian Thielscher) ==
−
<pubmed>  21930582</pubmed>
+
<pubmed>  21930582 22454536 14730013 10554775 21930585 6297745</pubmed>
  
−
== The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology ==
+
== The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz ==
 
<pubmed> 18292779 21930591 25500179</pubmed>
 
<pubmed> 18292779 21930591 25500179</pubmed>
  
−
== The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity ==
+
== The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider ==
 
<pubmed>  24452469,26682498 25798239 </pubmed>
 
<pubmed>  24452469,26682498 25798239 </pubmed>
  
−
== Protein independent ribozymes – about Hammerhead,  Varkud satellite,  hairpin ribozyme & Co ==
+
== Riboregulation and virulence, targeting by antibiotics: Theresia Eisele ==
−
<pubmed> 22454536 14730013 10554775 21930585 6297745</pubmed>
 
−
 
 
−
== RNA-based second messengers ==
 
−
<pubmed> 28420751    25616065 25682701    25869574 26280533</pubmed>
 
−
 
 
−
== Riboregulation and virulence, targeting by antibiotics ==
 
 
<pubmed>27651123      26416753
 
<pubmed>27651123      26416753
 
   27120414   27672192  28434876  28529506 28886688</pubmed>   
 
   27120414   27672192  28434876  28529506 28886688</pubmed>   
  
−
== Riboswitches ==
+
== Riboswitch modeling: Mark Sinzger ==
−
<pubmed>   27607554      26655897   28121427      29618088 25794618    25794617 25848023    24769284 25571850   25964329   26118534 26494285 28206750  28375729    28396576    28541183    28455443   29537923      27798597 29135333  29420816  28611182</pubmed>
+
<pubmed>19381267 28591515 27378291</pubmed>
  
−
== Protein- or tRNA-controlled RNA switches ==
 
−
<pubmed>25959893        24816551 25583497</pubmed>
 
−
 
−
== RNA thermometers ==
 
−
<pubmed>25477380 27060146 </pubmed>
 
 
   
 
   
−
== The RNA world and evolution ==
+
== The RNA world and evolution: Roman Doll ==
 
<pubmed>      25109990 25385129    25734234 25739364    26439358 17540026 29031737      28657884  19117371</pubmed>  
 
<pubmed>      25109990 25385129    25734234 25739364    26439358 17540026 29031737      28657884  19117371</pubmed>  
  
−
== RNA modification ==
+
== RNA modification: Jan Michel Göring ==
 
<pubmed>      26189113    26832457  27375676
 
<pubmed>      26189113    26832457  27375676
 
     28264529 28624569</pubmed>
 
     28264529 28624569</pubmed>
  
−
== RNA degradation/processing ==
+
== RNA degradation/processing: Lena Kricsfalussy-Hrabar ==
 
<pubmed>      26096689  28202538    19239894 </pubmed>  
 
<pubmed>      26096689  28202538    19239894 </pubmed>  
  
−
== Regulation by non-coding RNA ==
+
== Regulation by non-coding RNA: Maxin Drömer ==
 
  <pubmed>        18981470      24667238 </pubmed>
 
  <pubmed>        18981470      24667238 </pubmed>
  
−
== RNA dependent DNA Polymerases - from telomerase to retroviruses==
+
== RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel==
 
<pubmed>      18972389 26830230     28141967 </pubmed>  
 
<pubmed>      18972389 26830230     28141967 </pubmed>  
  
−
== RNA dependent RNA Polymerases – the RNA replicase ==
+
== CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier ==
−
<pubmed>          29439438     18268843 9878607 </pubmed>
 
−
 
 
−
== CRISPR/Cas: Science – the bacterial “immune” system ==
 
 
<pubmed>      29358495      29169146 28375731</pubmed>
 
<pubmed>      29358495      29169146 28375731</pubmed>
  
−
== CRISPR/Cas: Application and groundbreaking  perspectives ==
+
== CRISPR/Cas: Application and groundbreaking  perspectives: Johann Liebeton ==
 
<pubmed>    26771484 </pubmed>  
 
<pubmed>    26771484 </pubmed>  
  
−
== The mysterious function and role of 6S-RNA and pRNA in bacteria ==
+
== Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol ==
−
<pubmed>    24786589  17383220 24742053 23457253</pubmed>
 
−
 
 
−
== Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer ==
 
 
<pubmed>    22016848 26186290 21957054 23166520 21930591</pubmed>  
 
<pubmed>    22016848 26186290 21957054 23166520 21930591</pubmed>  
  
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== Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways ==
 
== Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways ==
 
<pubmed>  17627883 19943183  </pubmed>
 
<pubmed>  17627883 19943183  </pubmed>
 +
 +
== RNA-based second messengers: Jörg Stülke ==
 +
<pubmed> 28420751    25616065 25682701    25869574 26280533</pubmed>
 +
 +
== Riboswitches: Jörg Stülke ==
 +
<pubmed>    27607554      26655897   28121427      29618088 25794618    25794617 25848023    24769284 25571850   25964329 25959893        24816551 25583497  26118534 26494285 28206750  28375729    28396576    28541183    28455443   29537923      27798597 29135333  29420816  28611182</pubmed>
 +
 +
== RNA dependent RNA Polymerases – the RNA replicase ==
 +
<pubmed>          29439438     18268843 9878607 </pubmed>
 +
 +
== The mysterious function and role of 6S-RNA and pRNA in bacteria ==
 +
<pubmed>    24786589  17383220 24742053 23457253</pubmed>
 +
 +
== RNA thermometers==
 +
<pubmed>25477380 27060146 </pubmed>

Latest revision as of 13:42, 27 July 2018

Contents

Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas

What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl


RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner


Ribozymes (catalytically active RNAs: Christian Thielscher)

Christian Hammann, Andrej Luptak, Jonathan Perreault, Marcos de la Peña
The ubiquitous hammerhead ribozyme.
RNA: 2012, 18(5);871-85
[PubMed:22454536] [WorldCat.org] [DOI] (I p)

Sidney Altman
Ribonuclease P.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2936-41
[PubMed:21930585] [WorldCat.org] [DOI] (I p)

David M J Lilley
Mechanisms of RNA catalysis.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2910-7
[PubMed:21930582] [WorldCat.org] [DOI] (I p)

David M J Lilley
The Varkud satellite ribozyme.
RNA: 2004, 10(2);151-8
[PubMed:14730013] [WorldCat.org] [DOI] (P p)

R Shippy, R Lockner, M Farnsworth, A Hampel
The hairpin ribozyme. Discovery, mechanism, and development for gene therapy.
Mol Biotechnol: 1999, 12(1);117-29
[PubMed:10554775] [WorldCat.org] [DOI] (P p)

K Kruger, P J Grabowski, A J Zaug, J Sands, D E Gottschling, T R Cech
Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.
Cell: 1982, 31(1);147-57
[PubMed:6297745] [WorldCat.org] [DOI] (P p)


The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz


The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider


Riboregulation and virulence, targeting by antibiotics: Theresia Eisele


Riboswitch modeling: Mark Sinzger


The RNA world and evolution: Roman Doll


RNA modification: Jan Michel Göring


RNA degradation/processing: Lena Kricsfalussy-Hrabar


Regulation by non-coding RNA: Maxin Drömer


RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel


CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier


CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton


Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol


Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)


Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways

Sujin Jeong, Seung Ryul Han, Young Ju Lee, Seong-Wook Lee
Selection of RNA aptamers specific to active prostate-specific antigen.
Biotechnol Lett: 2010, 32(3);379-85
[PubMed:19943183] [WorldCat.org] [DOI] (I p)

Regina Stoltenburg, Christine Reinemann, Beate Strehlitz
SELEX--a (r)evolutionary method to generate high-affinity nucleic acid ligands.
Biomol Eng: 2007, 24(4);381-403
[PubMed:17627883] [WorldCat.org] [DOI] (P p)


RNA-based second messengers: Jörg Stülke


Riboswitches: Jörg Stülke


RNA dependent RNA Polymerases – the RNA replicase


The mysterious function and role of 6S-RNA and pRNA in bacteria


RNA thermometers

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