Difference between revisions of "Stusti 2018"

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= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas =
 
= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas =
  
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==  What makes RNA such a special molecule – specific chemical and structural features of RNA ==
+
==  What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl ==
−
<pubmed>  21930584
+
<pubmed>  21930584</pubmed>
−
</pubmed>
 
  
−
== RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair ==
+
== RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner ==
−
<pubmed>  24219496 8156586 28979293     26109351
+
<pubmed>  24219496 8156586 28979293 26109351</pubmed>
−
</pubmed>
 
  
−
== Ribozymes (catalytically active RNAs)==
+
== Ribozymes (catalytically active RNAs: Christian Thielscher) ==
−
<pubmed>     21930582  
+
<pubmed> 21930582 22454536 14730013 10554775 21930585 6297745</pubmed>
−
</pubmed>
 
  
−
=== The Ribosome - the role and function of ribosomal RNAs     and the central dogma of molecular biology ===
+
== The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz ==
−
<pubmed>     18292779 21930591 25500179
+
<pubmed> 18292779 21930591 25500179</pubmed>
−
</pubmed>
 
  
−
=== The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity ===
+
== The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider ==
−
<pubmed> 24452469 26682498 25798239
+
<pubmed> 24452469,26682498 25798239 </pubmed>
−
</pubmed>
 
  
−
=== Protein independent ribozymes – about Hammerhead,  Varkud satellite,  hairpin ribozyme and Co. ===
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== Riboregulation and virulence, targeting by antibiotics: Theresia Eisele ==
−
<pubmed>  22454536 14730013 10554775 21930585 6297745
 
−
</pubmed>
 
−
 
 
−
== RNA-based second messengers ==
 
−
<pubmed> 28420751    25616065 25682701    25869574 26280533</pubmed>
 
−
 
 
−
== Riboregulation and virulence, targeting by antibiotics ==
 
 
<pubmed>27651123      26416753
 
<pubmed>27651123      26416753
 
   27120414   27672192  28434876  28529506 28886688</pubmed>   
 
   27120414   27672192  28434876  28529506 28886688</pubmed>   
  
−
== Riboswitches ==
+
== Riboswitch modeling: Mark Sinzger ==
−
<pubmed>   27607554      26655897   28121427      29618088 25794618    25794617 25848023    24769284 25571850   25964329   26118534 26494285 28206750  28375729    28396576    28541183    28455443   29537923      27798597 29135333  29420816  28611182</pubmed>
+
<pubmed>19381267 28591515 27378291</pubmed>
  
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== Protein- or tRNA-controlled RNA switches ==
 
−
<pubmed>25959893        24816551
 
−
25583497</pubmed>
 
−
 
−
== RNA thermometers ==
 
−
<pubmed>25477380 27060146 </pubmed>
 
 
   
 
   
−
== The RNA world and evolution ==
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== The RNA world and evolution: Roman Doll ==
 
<pubmed>      25109990 25385129    25734234 25739364    26439358 17540026 29031737      28657884  19117371</pubmed>  
 
<pubmed>      25109990 25385129    25734234 25739364    26439358 17540026 29031737      28657884  19117371</pubmed>  
  
−
== RNA modification ==
+
== RNA modification: Jan Michel Göring ==
 
<pubmed>      26189113    26832457  27375676
 
<pubmed>      26189113    26832457  27375676
 
     28264529 28624569</pubmed>
 
     28264529 28624569</pubmed>
  
−
== RNA degradation/processing ==
+
== RNA degradation/processing: Lena Kricsfalussy-Hrabar ==
 
<pubmed>      26096689  28202538    19239894 </pubmed>  
 
<pubmed>      26096689  28202538    19239894 </pubmed>  
  
−
== Regulation by non-coding RNA ==
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== Regulation by non-coding RNA: Maxin Drömer ==
 
  <pubmed>        18981470      24667238 </pubmed>
 
  <pubmed>        18981470      24667238 </pubmed>
  
−
== RNAs as essential co-factors in protein enzymes ==
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== RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel==
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=== RNA dependent DNA Polymerases - from telomerase to retroviruses===
+
<pubmed>      18972389 26830230     28141967 </pubmed>  
−
<pubmed>      18972389 26830230     28141967
 
−
</pubmed>  
 
  
−
=== RNA dependent RNA Polymerases – the RNA replicase ===
+
== CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier ==
−
<pubmed>           29439438     18268843 9878607
+
<pubmed>     29358495      29169146 28375731</pubmed>
−
</pubmed>  
 
  
−
=== CRISPR/Cas: Science – the bacterial “immune” system ===
+
== CRISPR/Cas: Application and groundbreaking  perspectives: Johann Liebeton ==
−
<pubmed>      29358495      29169146
 
−
    28375731</pubmed>
 
−
 
 
−
=== CRISPR/Cas: Application and groundbreaking  perspectives ===
 
 
<pubmed>    26771484 </pubmed>  
 
<pubmed>    26771484 </pubmed>  
  
−
=== The mysterious function and role of 6S-RNA and pRNA in bacteria ===
+
== Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol ==
−
<pubmed>    24786589  17383220 24742053 23457253
+
<pubmed>   22016848 26186290 21957054 23166520 21930591</pubmed>  
−
</pubmed>
 
−
 
 
−
== Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer ==
 
−
<pubmed>     22016848 26186290     21957054 23166520 21930591
 
−
</pubmed>  
 
  
 
== Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA) ==
 
== Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA) ==
−
<pubmed>         28533025 25561718 26883671
+
<pubmed>       28533025 25561718 26883671 28485684 29182528 21925379</pubmed>
−
    28485684 29182528 21925379
 
−
</pubmed>
 
  
 
== Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways ==
 
== Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways ==
−
<pubmed>   17627883     19943183   
+
<pubmed> 17627883 19943183  </pubmed>
−
</pubmed>
+
 
 +
== RNA-based second messengers: Jörg Stülke ==
 +
<pubmed> 28420751    25616065 25682701    25869574 26280533</pubmed>
 +
 
 +
== Riboswitches: Jörg Stülke ==
 +
<pubmed>    27607554      26655897   28121427      29618088 25794618    25794617 25848023    24769284 25571850   25964329 25959893        24816551 25583497  26118534 26494285 28206750  28375729    28396576    28541183    28455443   29537923      27798597 29135333  29420816  28611182</pubmed>
 +
 
 +
== RNA dependent RNA Polymerases – the RNA replicase ==
 +
<pubmed>          29439438     18268843 9878607 </pubmed>
 +
 
 +
== The mysterious function and role of 6S-RNA and pRNA in bacteria ==
 +
<pubmed>    24786589  17383220 24742053 23457253</pubmed>
 +
 
 +
== RNA thermometers==
 +
<pubmed>25477380 27060146 </pubmed>

Latest revision as of 13:42, 27 July 2018

Contents

Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas

What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl


RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner


Ribozymes (catalytically active RNAs: Christian Thielscher)


The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz


The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider


Riboregulation and virulence, targeting by antibiotics: Theresia Eisele


Riboswitch modeling: Mark Sinzger


The RNA world and evolution: Roman Doll


RNA modification: Jan Michel Göring

Baixing Wu, Li Li, Ying Huang, Jinbiao Ma, Jinrong Min
##Title##
Curr Opin Struct Biol: 2017, 47;67-76
[PubMed:28624569] [WorldCat.org] [DOI] (I p)

Hiroyuki Hori
Transfer RNA methyltransferases with a SpoU-TrmD  (SPOUT) fold and their modified nucleosides in  tRNA.
Biomolecules: 2017, 7(1);
[PubMed:28264529] [WorldCat.org] [DOI] (I e)

Ajay K Rana, Serge Ankri
Reviving the RNA World: An Insight into the Appearance of RNA Methyltransferases.
Front Genet: 2016, 7;99
[PubMed:27375676] [WorldCat.org] [DOI] (P e)

Marcus Fislage, Lina Wauters, Wim Versées
Invited review: MnmE, a GTPase that drives a complex tRNA modification reaction.
Biopolymers: 2016, 105(8);568-79
[PubMed:26832457] [WorldCat.org] [DOI] (I p)

Clément Dégut, Luc Ponchon, Marcia Folly-Klan, Pierre Barraud, Carine Tisné
The m1A(58) modification in eubacterial tRNA: An overview of tRNA recognition and mechanism of catalysis by TrmI.
Biophys Chem: 2016, 210;27-34
[PubMed:26189113] [WorldCat.org] [DOI] (I p)


RNA degradation/processing: Lena Kricsfalussy-Hrabar


Regulation by non-coding RNA: Maxin Drömer

Yvonne Göpel, Muna A Khan, Boris Görke
Ménage à trois: post-transcriptional control of the key enzyme for cell envelope synthesis by a base-pairing small RNA, an RNase adaptor protein, and a small RNA mimic.
RNA Biol: 2014, 11(5);433-42
[PubMed:24667238] [WorldCat.org] [DOI] (I p)

Boris Görke, Jörg Vogel
Noncoding RNA control of the making and breaking of sugars.
Genes Dev: 2008, 22(21);2914-25
[PubMed:18981470] [WorldCat.org] [DOI] (P p)


RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel


CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier


CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton


Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol


Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)

Shahnaz Haque, Lorna W Harries
Circular RNAs (circRNAs) in Health and Disease.
Genes (Basel): 2017, 8(12);
[PubMed:29182528] [WorldCat.org] [DOI] (P e)

Feng Liu
Enhancer-derived RNA: A Primer.
Genomics Proteomics Bioinformatics: 2017, 15(3);196-200
[PubMed:28533025] [WorldCat.org] [DOI] (I p)

Kuei-Yang Hsiao, H Sunny Sun, Shaw-Jenq Tsai
Circular RNA - New member of noncoding RNA with novel functions.
Exp Biol Med (Maywood): 2017, 242(11);1136-1141
[PubMed:28485684] [WorldCat.org] [DOI] (I p)

Yiwen Fang, Melissa J Fullwood
Roles, Functions, and Mechanisms of Long Non-coding RNAs in Cancer.
Genomics Proteomics Bioinformatics: 2016, 14(1);42-54
[PubMed:26883671] [WorldCat.org] [DOI] (I p)

Tae-Kyung Kim, Martin Hemberg, Jesse M Gray
Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers.
Cold Spring Harb Perspect Biol: 2015, 7(1);a018622
[PubMed:25561718] [WorldCat.org] [DOI] (I e)

Kevin C Wang, Howard Y Chang
Molecular mechanisms of long noncoding RNAs.
Mol Cell: 2011, 43(6);904-14
[PubMed:21925379] [WorldCat.org] [DOI] (I p)


Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways


RNA-based second messengers: Jörg Stülke


Riboswitches: Jörg Stülke


RNA dependent RNA Polymerases – the RNA replicase


The mysterious function and role of 6S-RNA and pRNA in bacteria


RNA thermometers

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