Difference between revisions of "Stusti 2018"
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= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas = | = Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas = | ||
| − | == What makes RNA such a special molecule – specific chemical and structural features of RNA == | + | == What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl == |
<pubmed> 21930584</pubmed> | <pubmed> 21930584</pubmed> | ||
| − | == RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair == | + | == RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner == |
<pubmed> 24219496 8156586 28979293 26109351</pubmed> | <pubmed> 24219496 8156586 28979293 26109351</pubmed> | ||
| − | == Ribozymes (catalytically active RNAs | + | == Ribozymes (catalytically active RNAs: Christian Thielscher) == |
| − | <pubmed> 21930582</pubmed> | + | <pubmed> 21930582 22454536 14730013 10554775 21930585 6297745</pubmed> |
| − | == The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology == | + | == The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz == |
<pubmed> 18292779 21930591 25500179</pubmed> | <pubmed> 18292779 21930591 25500179</pubmed> | ||
| − | == The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity == | + | == The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider == |
<pubmed> 24452469,26682498 25798239 </pubmed> | <pubmed> 24452469,26682498 25798239 </pubmed> | ||
| − | + | == Riboregulation and virulence, targeting by antibiotics: Theresia Eisele == | |
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| − | == Riboregulation and virulence, targeting by antibiotics == | ||
<pubmed>27651123 26416753 | <pubmed>27651123 26416753 | ||
27120414 27672192 28434876 28529506 28886688</pubmed> | 27120414 27672192 28434876 28529506 28886688</pubmed> | ||
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== Riboswitch modeling: Mark Sinzger == | == Riboswitch modeling: Mark Sinzger == | ||
<pubmed>19381267 28591515 27378291</pubmed> | <pubmed>19381267 28591515 27378291</pubmed> | ||
| − | + | == RNA thermometers: Jana Horlacher == | |
| − | |||
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| − | == RNA thermometers == | ||
<pubmed>25477380 27060146 </pubmed> | <pubmed>25477380 27060146 </pubmed> | ||
| − | == The RNA world and evolution == | + | == The RNA world and evolution: Roman Doll == |
<pubmed> 25109990 25385129 25734234 25739364 26439358 17540026 29031737 28657884 19117371</pubmed> | <pubmed> 25109990 25385129 25734234 25739364 26439358 17540026 29031737 28657884 19117371</pubmed> | ||
| − | == RNA modification == | + | == RNA modification: Jan Michel Göring == |
<pubmed> 26189113 26832457 27375676 | <pubmed> 26189113 26832457 27375676 | ||
28264529 28624569</pubmed> | 28264529 28624569</pubmed> | ||
| − | == RNA degradation/processing == | + | == RNA degradation/processing: Lena Kricsfalussy-Hrabar == |
<pubmed> 26096689 28202538 19239894 </pubmed> | <pubmed> 26096689 28202538 19239894 </pubmed> | ||
| − | == Regulation by non-coding RNA == | + | == Regulation by non-coding RNA: Maxin Drömer == |
<pubmed> 18981470 24667238 </pubmed> | <pubmed> 18981470 24667238 </pubmed> | ||
| − | == RNA dependent DNA Polymerases - from telomerase to retroviruses== | + | == RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel== |
<pubmed> 18972389 26830230 28141967 </pubmed> | <pubmed> 18972389 26830230 28141967 </pubmed> | ||
| − | + | == CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier == | |
| − | |||
| − | |||
| − | == CRISPR/Cas: Science – the bacterial “immune” system == | ||
<pubmed> 29358495 29169146 28375731</pubmed> | <pubmed> 29358495 29169146 28375731</pubmed> | ||
| − | == CRISPR/Cas: Application and groundbreaking perspectives == | + | == CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton == |
<pubmed> 26771484 </pubmed> | <pubmed> 26771484 </pubmed> | ||
| − | + | == Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol == | |
| − | |||
| − | |||
| − | == Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer == | ||
<pubmed> 22016848 26186290 21957054 23166520 21930591</pubmed> | <pubmed> 22016848 26186290 21957054 23166520 21930591</pubmed> | ||
| Line 74: | Line 56: | ||
== Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways == | == Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways == | ||
<pubmed> 17627883 19943183 </pubmed> | <pubmed> 17627883 19943183 </pubmed> | ||
| + | |||
| + | == RNA-based second messengers: Jörg Stülke == | ||
| + | <pubmed> 28420751 25616065 25682701 25869574 26280533</pubmed> | ||
| + | |||
| + | == Riboswitches: Jörg Stülke == | ||
| + | <pubmed> 27607554 26655897 28121427 29618088 25794618 25794617 25848023 24769284 25571850 25964329 25959893 24816551 25583497 26118534 26494285 28206750 28375729 28396576 28541183 28455443 29537923 27798597 29135333 29420816 28611182</pubmed> | ||
| + | |||
| + | == RNA dependent RNA Polymerases – the RNA replicase == | ||
| + | <pubmed> 29439438 18268843 9878607 </pubmed> | ||
| + | |||
| + | == The mysterious function and role of 6S-RNA and pRNA in bacteria == | ||
| + | <pubmed> 24786589 17383220 24742053 23457253</pubmed> | ||
Revision as of 18:52, 20 July 2018
Contents
- 1 Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas
- 1.1 What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl
- 1.2 RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner
- 1.3 Ribozymes (catalytically active RNAs: Christian Thielscher)
- 1.4 The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz
- 1.5 The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider
- 1.6 Riboregulation and virulence, targeting by antibiotics: Theresia Eisele
- 1.7 Riboswitch modeling: Mark Sinzger
- 1.8 RNA thermometers: Jana Horlacher
- 1.9 The RNA world and evolution: Roman Doll
- 1.10 RNA modification: Jan Michel Göring
- 1.11 RNA degradation/processing: Lena Kricsfalussy-Hrabar
- 1.12 Regulation by non-coding RNA: Maxin Drömer
- 1.13 RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel
- 1.14 CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier
- 1.15 CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton
- 1.16 Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol
- 1.17 Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)
- 1.18 Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways
- 1.19 RNA-based second messengers: Jörg Stülke
- 1.20 Riboswitches: Jörg Stülke
- 1.21 RNA dependent RNA Polymerases – the RNA replicase
- 1.22 The mysterious function and role of 6S-RNA and pRNA in bacteria
Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas
What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl
RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner
Ribozymes (catalytically active RNAs: Christian Thielscher)
The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz
The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider
Riboregulation and virulence, targeting by antibiotics: Theresia Eisele
Juan J Quereda, Pascale Cossart
Regulating Bacterial Virulence with RNA.
Annu Rev Microbiol: 2017, 71;263-280
[PubMed:28886688]
[WorldCat.org]
[DOI]
(I p)
Petra Dersch, Muna A Khan, Sabrina Mühlen, Boris Görke
Roles of Regulatory RNAs for Antibiotic Resistance in Bacteria and Their Potential Value as Novel Drug Targets.
Front Microbiol: 2017, 8;803
[PubMed:28529506]
[WorldCat.org]
[DOI]
(P e)
Hao Wang, Paul A Mann, Li Xiao, Charles Gill, Andrew M Galgoci, John A Howe, Artjohn Villafania, Christopher M Barbieri, Juliana C Malinverni, Xinwei Sher, Todd Mayhood, Megan D McCurry, Nicholas Murgolo, Amy Flattery, Matthias Mack, Terry Roemer
Dual-Targeting Small-Molecule Inhibitors of the Staphylococcus aureus FMN Riboswitch Disrupt Riboflavin Homeostasis in an Infectious Setting.
Cell Chem Biol: 2017, 24(5);576-588.e6
[PubMed:28434876]
[WorldCat.org]
[DOI]
(I p)
Andreas Matern, Danielle Pedrolli, Stephanie Großhennig, Jörgen Johansson, Matthias Mack
Uptake and Metabolism of Antibiotics Roseoflavin and 8-Demethyl-8-Aminoriboflavin in Riboflavin-Auxotrophic Listeria monocytogenes.
J Bacteriol: 2016, 198(23);3233-3243
[PubMed:27672192]
[WorldCat.org]
[DOI]
(I e)
Aaron M Nuss, Ann Kathrin Heroven, Petra Dersch
RNA Regulators: Formidable Modulators of Yersinia Virulence.
Trends Microbiol: 2017, 25(1);19-34
[PubMed:27651123]
[WorldCat.org]
[DOI]
(I p)
Daniel Dar, Maya Shamir, J R Mellin, Mikael Koutero, Noam Stern-Ginossar, Pascale Cossart, Rotem Sorek
Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria.
Science: 2016, 352(6282);aad9822
[PubMed:27120414]
[WorldCat.org]
[DOI]
(I p)
John A Howe, Hao Wang, Thierry O Fischmann, Carl J Balibar, Li Xiao, Andrew M Galgoci, Juliana C Malinverni, Todd Mayhood, Artjohn Villafania, Ali Nahvi, Nicholas Murgolo, Christopher M Barbieri, Paul A Mann, Donna Carr, Ellen Xia, Paul Zuck, Dan Riley, Ronald E Painter, Scott S Walker, Brad Sherborne, Reynalda de Jesus, Weidong Pan, Michael A Plotkin, Jin Wu, Diane Rindgen, John Cummings, Charles G Garlisi, Rumin Zhang, Payal R Sheth, Charles J Gill, Haifeng Tang, Terry Roemer
Selective small-molecule inhibition of an RNA structural element.
Nature: 2015, 526(7575);672-7
[PubMed:26416753]
[WorldCat.org]
[DOI]
(I p)
Riboswitch modeling: Mark Sinzger
RNA thermometers: Jana Horlacher
The RNA world and evolution: Roman Doll
RNA modification: Jan Michel Göring
RNA degradation/processing: Lena Kricsfalussy-Hrabar
Regulation by non-coding RNA: Maxin Drömer
RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel
CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier
CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton
Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol
Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)
Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways
RNA-based second messengers: Jörg Stülke
Riboswitches: Jörg Stülke
RNA dependent RNA Polymerases – the RNA replicase
The mysterious function and role of 6S-RNA and pRNA in bacteria
