Difference between revisions of "RatA"
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− | * '''Description:''' regulatory RNA, ncRNA, antisense for txpA <br/><br/> | + | * '''Description:''' regulatory RNA, [[small RNAs|ncRNA]], antisense for ''[[txpA]]'' <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"| '''Product''' || txpA antisense RNA | + | |style="background:#ABCDEF;" align="center"| '''Product''' || ''[[txpA]]'' [[small RNAs|antisense RNA]] |
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"|'''Function''' || control of txpA expression | + | |style="background:#ABCDEF;" align="center"|'''Function''' || control of ''[[txpA]]'' expression |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 222 bp | |style="background:#ABCDEF;" align="center"| '''Gene length''' || 222 bp | ||
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[txpA]]'', ''[[bsrH]]'' |
|- | |- | ||
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt Gene sequence (+200bp) ]''' | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt Gene sequence (+200bp) ]''' | ||
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]] | ||
− | + | |- | |
+ | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=S976_2678362_2678577_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:ratA_expression.png|500px]] | ||
|- | |- | ||
|} | |} | ||
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<br/><br/> | <br/><br/> | ||
+ | = [[Categories]] containing this gene/protein = | ||
+ | {{SubtiWiki category|[[toxins, antitoxins and immunity against toxins]]}}, | ||
+ | {{SubtiWiki category|[[Skin element]]}}, | ||
+ | {{SubtiWiki category|[[ncRNA]]}} | ||
+ | |||
+ | = This gene is a member of the following [[regulons]] = | ||
+ | |||
+ | =The [[ratA regulon]]: ''[[txpA]]'' = | ||
=The gene= | =The gene= | ||
=== Basic information === | === Basic information === | ||
− | * ''' | + | * '''Locus tag:''' |
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
=== Database entries === | === Database entries === | ||
+ | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?] | ||
+ | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?] | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
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* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
− | * '''Additional information:''' | + | * '''Additional information:''' |
+ | ** the ''[[txpA]]'' mRNA-''[[RatA]]'' RNA duplex is degraded by [[rnc|RNase III]] {{PubMed|23300471}} | ||
=Biological materials = | =Biological materials = | ||
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=References= | =References= | ||
+ | ==Reviews== | ||
+ | <pubmed> 23300472 </pubmed> | ||
+ | |||
+ | ==Original publications== | ||
+ | <pubmed>16166525, 23300471</pubmed> | ||
− | + | [[Category:small RNA]] | |
− |
Latest revision as of 12:06, 28 January 2017
Gene name | ratA |
Synonyms | |
Essential | no |
Product | txpA antisense RNA |
Function | control of txpA expression |
Gene length | 222 bp |
Immediate neighbours | txpA, bsrH |
Gene sequence (+200bp) | |
Genetic context File:GenE context.gif | |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
toxins, antitoxins and immunity against toxins, Skin element, ncRNA
This gene is a member of the following regulons
The ratA regulon: txpA
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry:
- Structure:
Additional information
The RNA
binds the txpA mRNA and triggers its degradation PubMed
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Richard Losick, Harvard University, Cambridge, USA Homepage
Your additional remarks
References
Reviews
Original publications