ydcQ

ydcQ
168

coupling protein, part of the type IV secretion system for DNA transfer

Locus
BSU_04860
Molecular weight
54.57 kDa
Isoelectric point
9.28
Protein length
480 aaSequenceBlast
Gene length
1443 bpSequenceBlast
Function
conjugative transfer of ICEBs1
Product
coupling protein, part of the type IV secretion system for DNA transfer
Essential
no
E.C.
null
Synonyms
ydcQ, conQ
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

List of homologs in different organisms, belongs to COG1674 (Galperin et al., 2021)

This gene is a member of the following regulons

ImmR regulon

Gene
Coordinates
533,338  534,780
The protein
Domains
FtsK domain (aa 217-399) (according to UniProt)
Structure
6O1X (PDB) (from Clostridium perfringens, corresponds to aa 219 ... 396, 27% identity)
P96634 (AlphaFold)
Localization
cell membrane (according to UniProt)
Expression and Regulation
Operons
Genes
xis-ydzL-devI-ydcP-ydcQ-nicK-S172-ramS-ramT-ramA-conB-conC-conD-conE-yddF-conG-cwlT-yddI-yddJ
Description
PubMed
Regulatory mechanism
ImmR: repression, PubMed, in immR regulon
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xis->yddJ

2025-04-04 00:35:31

Bzhu

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9225e26ee70027d168e8ea0db13fb48c93ef1ef8

DE8D2BDC2F23AB45C58B0FE511E7B4816A65A489

Biological materials
Mutant
BKE04860 (ydcQ::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATATACATCACCCGCCTGC,  downstream forward: _UP4_AGCGGCGAAGGAGTGAGCGA
BKK04860 (ydcQ::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATATACATCACCCGCCTGC,  downstream forward: _UP4_AGCGGCGAAGGAGTGAGCGA
References
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Time of last update: 2025-04-06 07:48:49

Author of last update: Jstuelk