Difference between revisions of "CotU"
(→Expression and regulation) |
|||
(31 intermediate revisions by 6 users not shown) | |||
Line 13: | Line 13: | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || resistance of the spore | |style="background:#ABCDEF;" align="center"|'''Function''' || resistance of the spore | ||
+ | |- | ||
+ | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17670 cotU] | ||
+ | |- | ||
+ | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CotU CotU] | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 6.315 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 6.315 | ||
Line 18: | Line 22: | ||
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 258 bp, 86 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 258 bp, 86 aa | ||
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yncF]]'', ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yncF]]'', ''[[ynzJ]]'' |
|- | |- | ||
− | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17670 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17670 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17670 DNA_with_flanks] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ynzH_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ynzH_context.gif]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
+ | |- | ||
+ | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotU_1901117_1901377_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:cotU_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17670]] | ||
|- | |- | ||
|} | |} | ||
__TOC__ | __TOC__ | ||
+ | <br/><br/><br/><br/> | ||
+ | <br/><br/><br/><br/> | ||
+ | <br/><br/><br/><br/> | ||
+ | <br/><br/> | ||
+ | |||
+ | = [[Categories]] containing this gene/protein = | ||
+ | {{SubtiWiki category|[[sporulation proteins]]}} | ||
− | + | = This gene is a member of the following [[regulons]] = | |
+ | {{SubtiWiki regulon|[[GerE regulon]]}}, | ||
+ | {{SubtiWiki regulon|[[GerR regulon]]}}, | ||
+ | {{SubtiWiki regulon|[[SigK regulon]]}} | ||
=The gene= | =The gene= | ||
Line 35: | Line 51: | ||
=== Basic information === | === Basic information === | ||
− | * ''' | + | * '''Locus tag:''' BSU17670 |
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
=== Database entries === | === Database entries === | ||
+ | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU17670&redirect=T BSU17670] | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
Line 46: | Line 63: | ||
=== Additional information=== | === Additional information=== | ||
+ | |||
+ | |||
Line 70: | Line 89: | ||
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
− | * '''Interactions:''' [[CotC]]-[[CotU]] | + | * '''[[SubtInteract|Interactions]]:''' |
+ | ** [[CotC]]-[[CotU]] {{PubMed|18065538}}, [[CotE]]-[[CotU]] {{PubMed|20023017}} | ||
− | * '''Localization:''' | + | * '''[[Localization]]:''' |
+ | ** outer spore coat, localization depends on [[CotE]] {{PubMed|22171814}} | ||
+ | ** the [[CotC]]-[[CotU]] complex assembles around the forming spore {{PubMed|18065538}} | ||
=== Database entries === | === Database entries === | ||
+ | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU17670&redirect=T BSU17670] | ||
* '''Structure:''' | * '''Structure:''' | ||
− | * ''' | + | * '''UniProt:''' [http://www.uniprot.org/uniprot/O31802 O31802] |
− | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu | + | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17670] |
* '''E.C. number:''' | * '''E.C. number:''' | ||
Line 88: | Line 111: | ||
=Expression and regulation= | =Expression and regulation= | ||
− | * '''Operon:''' | + | * '''Operon:''' ''cotU'' {{PubMed|22383849}} |
− | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotU_1901117_1901377_-1 cotU] {{PubMed|22383849}} |
+ | |||
+ | * '''Sigma factor:''' [[SigK]] {{PubMed|18065538}} | ||
* '''Regulation:''' | * '''Regulation:''' | ||
+ | ** expressed late during sporulation in the mother cell ([[SigK]], [[GerE]]) {{PubMed|18065538}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
+ | ** [[GerE]]: transcription activation {{PubMed|18065538}} | ||
+ | ** [[GerR]]: transcription repression {{PubMed|20435725}} | ||
− | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Line 118: | Line 146: | ||
=References= | =References= | ||
− | + | <pubmed>18065538,12562816, 20023017,20435725 22171814</pubmed> | |
+ | |||
+ | [[Category:Protein-coding genes]] |
Latest revision as of 13:50, 6 April 2015
- Description: spore coat protein
Gene name | cotU |
Synonyms | ynzH |
Essential | no |
Product | spore coat protein |
Function | resistance of the spore |
Gene expression levels in SubtiExpress: cotU | |
Interactions involving this protein in SubtInteract: CotU | |
MW, pI | 11 kDa, 6.315 |
Gene length, protein length | 258 bp, 86 aa |
Immediate neighbours | yncF, ynzJ |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
GerE regulon, GerR regulon, SigK regulon
The gene
Basic information
- Locus tag: BSU17670
Phenotypes of a mutant
Database entries
- BsubCyc: BSU17670
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU17670
- Structure:
- UniProt: O31802
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon: cotU PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References