ycdA

ycdA
168

lipoprotein, required for swarming motility

Locus
BSU_02780
Molecular weight
39.02 kDa
Isoelectric point
4.71
Protein length
354 aaSequenceBlast
Gene length
1065 bpSequenceBlast
Function
swarming motility
Product
lipoprotein
Essential
no
Synonyms
ycdA
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms

This gene is a member of the following regulons

Gene
Coordinates
299,438  300,502
Phenotypes of a mutant
reduced swarming motility PubMed
The protein
Domains
DUF4352 (aa 39 ... 148) (according to UniProt)
DUF5105 (aa 164 ... 352) (according to UniProt)
Structure
4R4G (PDB)
O34538 (AlphaFold)
Localization
lipoprotein PubMed
membrane associated PubMed
Expression and Regulation
Operons
Genes
ycdA
Description
PubMed
Regulation
expression is reduced in motile cells as compared to non-motile cells PubMed
Regulatory mechanism
DegU: activation, DegU-P, PubMed, in degU regulon
SwrAA/2: activation, in swrAA/2 regulon
Abh: repression, in abh regulon
AbrB: repression, in abrB regulon
Additional information
term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of ycdA PubMed
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ycdA

2025-03-31 10:21:22

Jstuelk

113

CA4422290FB117321B6D380851E558F5A6A76B16

7CA3EAACAA410D7AF7E5FC8DCAD44129CFC190CC

Biological materials
Mutant
MGNA-B978 (ycdA::erm), available at the NBRP B. subtilis, Japan
BKE02780 (ycdA::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTCATTTTTCCTCCTCAA,  downstream forward: _UP4_TAAAACACCAAAAGGAAATA
BKK02780 (ycdA::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTCATTTTTCCTCCTCAA,  downstream forward: _UP4_TAAAACACCAAAAGGAAATA
References
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Page visits: 6227

Time of last update: 2025-04-06 05:28:39

Author of last update: Jstuelk