ybdJ

ybdJ
168

two-component response regulator (OmpR family)

Locus
BSU_02000
Molecular weight
26.03 kDa
Isoelectric point
6.35
Protein length
223 aaSequenceBlast
Gene length
672 bpSequenceBlast
Function
unknown
Product
two-component response regulator (OmpR family)
Essential
no
Synonyms
ybdJ
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

List of homologs in different organisms, belongs to COG0745 (Galperin et al., 2021)

Gene
Coordinates
221,258  221,929
The protein
Protein family
OmpR family of two-component response regulators
Domains
Response regulatory domain (aa 5-116) (according to UniProt)
Structure
1KGS (PDB)(from Thermotoga maritima, 32% identity) PubMed
O31432 (AlphaFold)
Modification
phosphorylated by YbdK on an Asp residue
Effectors of protein activity
phosphorylation likely affects DNA-binding activity
Localization
cytoplasm (according to Swiss-Prot)
Biological materials
Mutant
MGNA-B956 (ybdJ::erm), available at the NBRP B. subtilis, Japan
BKE02000 (ybdJ::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_GATTAAAATACGATAACCCT,  downstream forward: _UP4_TGAAGCTCAAGACAAAATAT
BKK02000 (ybdJ::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_GATTAAAATACGATAACCCT,  downstream forward: _UP4_TGAAGCTCAAGACAAAATAT
References
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Time of last update: 2025-04-24 04:16:36

Author of last update: Melvin.boenninger