rhiF

rhiF
168

ABC transporter (membrane protein) for rhamnose oligosaccharides

Locus
BSU_06980
Molecular weight
34.46 kDa
Isoelectric point
9.47
Protein length
309 aaSequenceBlast
Gene length
930 bpSequenceBlast
Function
uptake of rhamnose oligosaccharides
Product
rhamnose oligosaccharide ABC transporter
Essential
no
Synonyms
rhiF, yesP
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1175 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
762,942  763,871
The protein
Protein family
Binding-protein-dependent transport system permease family (according to UniProt)
MalFG subfamily (according to UniProt)
Domains
ABC transmembrane type-1 domain (aa 80-294) (according to UniProt)
Structure
4TQU (PDB) (from Sphingomonas sp., corresponds to aa 13 - 231, 28% identity) PubMed
O31519 (AlphaFold)
Localization
cell membrane PubMed
Expression and Regulation
Operons
Genes
rhiL-rhiF-rhiG-rhiN-rhgR-yesT-yesU-yesV-yesW-yesX-yesY-yesZ
Description
PubMed
Regulation
induced by pectin (RhgR, RhgL) PubMed
repressed by glucose (CcpA) PubMed
Regulatory mechanism
RhgR: activation, PubMed, in rhgR regulon
SigA: Sigma factor, PubMed, in sigA regulon
RhgL: activation, PubMed, in rhgL regulon
CcpA: repression, PubMed, in ccpA regulon
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rhiL→yesZ

2025-03-16 17:43:25

Jstuelk

117

D891C8F38E150B653BA655BA6352352D86D18BAE

A10D4124F5AF6831808648D33C98AF061D3703AA

Biological materials
Mutant
MGNA-A948 (yesP::erm), available at the NBRP B. subtilis, Japan
BKE06980 (rhiF::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTGCGTCAGCCCCATTTC,  downstream forward: _UP4_TACGAGTCAAAGGAGGAATG
BKK06980 (rhiF::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTGCGTCAGCCCCATTTC,  downstream forward: _UP4_TACGAGTCAAAGGAGGAATG
References
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2DC415DCC2ECC3B46526108638DDB46C28832041

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Time of last update: 2025-04-04 05:18:43

Author of last update: Jstuelk