yukD
168

Ubiquitin-like protein, part of the type VII protein secretion system YukD-EssB-YukB-YueB-YueC, putative bacteriocin

Locus

BSU_31900

Molecular weight

8.94 kDa

Isoelectric point

6.31

Protein length

79 aaSequenceBlast

Gene length

240 bpSequenceBlast

Function

export of YfjA, YukE, YxiB, YwqH

Product

ubiquitin-like protein, part of the type VII protein secretion system, putative bacteriocin

Essential

Synonyms

yukD

Outlinks

BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

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Categories containing this gene/protein

List of homologs in different organisms, belongs to COG5417 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene

Coordinates

3,275,832 3,276,071

Phenotypes of a mutant

loss of secretion of YukE PubMed

The protein

Catalyzed reaction/ biological activity

export of YfjA, YukE, YxiB, YwqH PubMed

secretion and delivery of LXG domain toxins PubMed

Protein family

EsaB family (single member, according to UniProt)

Structure

2BPS (PDB)

P71071 (AlphaFold)

Expression and Regulation

Operons

Genes

yukE-yukD-essB-yukB-yueB-yueC-yueD

Description

PubMed

Regulation

expressed in the stationary phase PubMed

expression is reduced in motile cells as compared to non-motile cells PubMed

Regulatory mechanism

DegU: activation, DegU-P, PubMed, in degU regulon

Sigma factors

SigA: sigma factor, PubMed, in sigA regulon

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Biological materials

Mutant

MGNA-A627 (yukD::erm), available at the NBRP B. subtilis, Japan

BKE31900 (yukD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTTAGGATCACCCTTACA, downstream forward: _UP4_ATATTATGAAAGGATCTGGT

BKK31900 (yukD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTTAGGATCACCCTTACA, downstream forward: _UP4_ATATTATGAAAGGATCTGGT

References

Reviews

Original Publications

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Time of last update: 2025-04-10 07:00:19

Author of last update: Jstuelk

yukD 168

yukD
168