ydgF

ydgF
168

similar to amino acid permease

Locus
BSU_05620
Molecular weight
50.63 kDa
Isoelectric point
9.34
Protein length
458 aaSequenceBlast
Gene length
1377 bpSequenceBlast
Function
unknown
Product
unknown
Essential
no
Synonyms
ydgF
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1113 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
606,699 → 608,075
The protein
Protein family
amino acid-polyamine-organocation (APC) superfamily (according to UniProt)
Structure
6F34 (PDB) (from Geobacillus kaustophilus, the C-terminal domain, aa 203-458, 26% identity) PubMed
P96704 (AlphaFold)
Paralogous protein(s)
AapA, GabP, AlaP, HutM, YvbW, AimB, RocC, RocE, YbgF
Localization
cell membrane (according to UniProt)
Expression and Regulation
Operons
Genes
ydgF
Description
PubMed
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ydgF

2025-04-09 17:29:39

Jstuelk

85

418b850d4e16201fd72dd12cf89c8964c0376872

E4EA8735E446E55F5F2450CA86DDB3040E8EDA05

Biological materials
Mutant
GP3610 GP3595 (erm), available in Jörg Stülke's lab
GP2930 (ΔydgF::cat) available in Jörg Stülke's lab PubMed
MGNA-C084 (ydgF::erm), available at the NBRP B. subtilis, Japan
BKE05620 (ΔydgF::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CACTTTATGTGTTCCTCCAT,  downstream forward: _UP4_TAAGACTCAAAACTCCTGCC
BKK05620 (ΔydgF::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CACTTTATGTGTTCCTCCAT,  downstream forward: _UP4_TAAGACTCAAAACTCCTGCC
LacZ fusion
GP4225 (based on pAC7), available in Jörg Stülke's lab
References
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C7FEA1D9C7C96C39CEE83CE3F13D412DE6AFE10E

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Time of last update: 2025-04-10 18:35:24

Author of last update: Jstuelk