yxiD

yxiD
168

LXG toxin, non-specific metal-dependent RNase

Locus
BSU_39300
Molecular weight
64.13 kDa
Isoelectric point
9.4
Protein length
569 aaSequenceBlast
Gene length
1710 bpSequenceBlast
Function
competetion with other bacteria in biofilms
Product
LXG toxin, RNase
Essential
no
E.C.
null
Synonyms
yxiD
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG5444 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
4,036,784 → 4,038,493
Phenotypes of a mutant
the mutant is outcompeted by wild type cells in biofilms PubMed
The protein
Domains
LXG domain (aa 1-235) (according to UniProt)
Structure
P42296 (AlphaFold)
Localization
secreted
secretion and delivery requires WXG100 and the T7SS (YukD-EssB-YukB-YueB-YueC-YueD) PubMed
Expression and Regulation
Operons
Genes
yxiB-yxiC-yxiD-yxxD-yxxE
Description
PubMed
Open in new tab

yxiB→yxxE

2025-04-04 15:56:09

Jstuelk

96

6811039ab2839b666e83f7f56b9c32b670963970

12030EE6982066B43F7653DACDC2A8EF2C3924DB

Biological materials
Mutant
MGNA-B717 (yxiD::erm), available at the NBRP B. subtilis, Japan
BKE39300 (ΔyxiD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG,  downstream forward: _UP4_AAATGAGTTATAATTTTATA
BKK39300 (ΔyxiD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG,  downstream forward: _UP4_AAATGAGTTATAATTTTATA
References
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BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991

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Time of last update: 2025-04-10 18:10:24

Author of last update: Jstuelk