yxkH

yxkH
168

similar to polysaccharide deacetylase

Locus
BSU_38800
Molecular weight
31.26 kDa
Isoelectric point
7.8
Protein length
279 aaSequenceBlast
Gene length
840 bpSequenceBlast
Function
unknown
Product
unknown
Essential
no
Synonyms
yxkH
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0726 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,983,187 → 3,984,026
The protein
Protein family
polysaccharide deacetylase family (according to UniProt)
Domains
NodB homology domain (aa 119-279) (according to UniProt)
Structure
1HD5 (PDB) (from B. cereus, 30% identity)
P94361 (AlphaFold)
Localization
cell membrane (according to UniProt)
Expression and Regulation
Operons
Genes
yxkH
Description
PubMed
Sigma factors
SigD: sigma factor, PubMed, in sigD regulon
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yxkH

2025-03-20 21:41:40

ghost

67

98833ae5754f8463b52dd7309aee32e57847148e

F099993BCF691398E09C22BF161CA8E488C30F11

Biological materials
Mutant
MGNA-B742 (yxkH::erm), available at the NBRP B. subtilis, Japan
BKE38800 (ΔyxkH::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG,  downstream forward: _UP4_TCAATGAAATAAAAAAAGGC
BKK38800 (ΔyxkH::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG,  downstream forward: _UP4_TCAATGAAATAAAAAAAGGC
References
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Time of last update: 2025-04-04 14:07:59

Author of last update: Melvin.boenninger