ytrF

ytrF
168

ABC transporter (substrate-binding lipoprotein)

Locus
BSU_30410
Molecular weight
48.26 kDa
Isoelectric point
8.29
Protein length
436 aaSequenceBlast
Gene length
1311 bpSequenceBlast
Function
unknown
Product
ABC transporter  (substrate-binding lipoprotein)
Essential
no
Synonyms
ytrF
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG4591 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,113,979  3,115,289
The protein
Protein family
ABC-4 integral membrane protein family (according to UniProt)
Structure
O35005 (AlphaFold)
Localization
cell membrane (via YtrC-YtrD) PubMed
Expression and Regulation
Operons
Genes
ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF
Description
PubMed
Regulation
expressed early in the stationary phase PubMed
Regulatory mechanism
YtrA: repression, PubMed, in ytrA regulon
Sigma factors
SigA: sigma factor, PubMed, in sigA regulon
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ytrG→ytrF

2025-04-03 11:46:28

Jstuelk

125

511c9f88e4f29ce72433096dbf0fd3dc5c038eeb

AE29C5AEECDD6994F28E6275F3C275A0539AF619

Biological materials
Mutant
GP2700 (ΔytrF::cat), available in Jörg Stülke's lab PubMed
GP3192 (ΔytrF), available in Jörg Stülke's lab PubMed
GP2646 Δ(ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF)::ermC, available in Jörg Stülke's lab PubMed
MGNA-A132 (ytrF::erm), available at the NBRP B. subtilis, Japan
BKE30410 (ytrF::erm  trpC2) available at BGSC and in Jörg Stülke's lab,  PubMed, upstream reverse: _UP1_TCTTCTGATAAAATGAACCT,  downstream forward: _UP4_TAATGCGAACGAGCCGGCTG
BKK30410 (ytrF::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_TCTTCTGATAAAATGAACCT,  downstream forward: _UP4_TAATGCGAACGAGCCGGCTG
References
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9024AB63030C1934A954EE6A378CADBDC977E863

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Time of last update: 2025-04-13 15:29:31

Author of last update: Jstuelk