YdiO

• Description: similar to DNA-3-methyladenine glycosidase II
  
  

Gene name	ydiO
Synonyms
Essential	yes PubMed
Product	unknown
Function	BsuM DNA modification
Gene expression levels in SubtiExpress: ydiO
MW, pI	48 kDa, 7.659
Gene length, protein length	1281 bp, 427 aa
Immediate neighbours	ydzV, ydiP
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

DNA restriction/ modification, essential genes, prophage 3

This gene is a member of the following regulons

LexA regulon

The gene

Basic information

• Locus tag: BSU06060

Phenotypes of a mutant

essential PubMed, mutation is only possible in a ydiR, ydiS, or ydjA background (i. e., in the absence of the BsuM DNA restriction system) PubMed

Database entries

• BsubCyc: BSU06060

• DBTBS entry: [1]

• SubtiList entry: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family:

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• BsubCyc: BSU06060

• Structure:

• UniProt: O34939

• KEGG entry: [3]

• E.C. number:

Expression and regulation

• Operon: ydiO-ydiP PubMed

• Expression browser: ydiO PubMed

• Sigma factor:

• Regulation:
  • induced by DNA damage (LexA) PubMed

• Regulatory mechanism:
  • LexA: transcription repression PubMed

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody: