YwbD

• Description: unknown
  
  

Gene name	ywbD
Synonyms	ipa-19d
Essential	no
Product	unknown
Function	unknown
Gene expression levels in SubtiExpress: ywbD
MW, pI	44 kDa, 9.178
Gene length, protein length	1188 bp, 396 aa
Immediate neighbours	ywbE, glxA
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

SinR regulon

The gene

Basic information

• Locus tag: BSU38360

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C(5)-methylcytosine (according to Swiss-Prot)

• Protein family: RlmI family (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactors:

• Effectors of protein activity:

• Interactions:

• Localization:
  • cytoplasm (according to Swiss-Prot)

Database entries

• Structure:

• UniProt: P39587

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: ywbD PubMed

• Sigma factor:

• Regulation:
  • repressed by SinR PubMed

• Regulatory mechanism:
  • SinR: transcription repression PubMed

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion: GP1614 amyE::p(ywbD-lacZ cat), constructed with pGP2150 based on pAC5, available in Jörg Stülke's lab

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Frances Chu, Daniel B Kearns, Steven S Branda, Roberto Kolter, Richard Losick
Targets of the master regulator of biofilm formation in Bacillus subtilis.
Mol Microbiol: 2006, 59(4);1216-28
[PubMed:16430695] [WorldCat.org] [DOI] (P p)