Difference between revisions of "CotD"
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* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
− | ** inner spore coat {{PubMed|19933362}} | + | ** inner spore coat {{PubMed|19933362}}, localization depends on [[SafA]] {{PubMed|22171814}} |
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotD_2332784_2333011_-1 cotD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotD_2332784_2333011_-1 cotD] {{PubMed|22383849}} | ||
− | * '''Sigma factor:''' [[SigK]] {{PubMed|15699190}} | + | * '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190}} |
* '''Regulation:''' | * '''Regulation:''' | ||
− | ** expressed late during sporulation in the mother cell ([[SigK]], [[SpoIIID]]) {{PubMed|15699190,7966271}} | + | ** expressed late during sporulation in the mother cell ([[SigK]], [[SpoIIID]], [[GerE]]) {{PubMed|15383836,15699190,7966271}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
** [[SpoIIID]]: transcription repression {{PubMed|7966271}} | ** [[SpoIIID]]: transcription repression {{PubMed|7966271}} | ||
+ | ** [[GerE]]: transcription activation {{PubMed|15383836}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
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=References= | =References= | ||
− | <pubmed> 19933362,1518043,2821284,2492118,1691789,14651647, 15699190,7966271</pubmed> | + | <pubmed> 19933362,1518043,2821284,2492118,1691789,14651647, 15699190,7966271 22171814 15383836</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] |
Revision as of 17:36, 13 August 2013
- Description: spore coat protein (inner)
Gene name | cotD |
Synonyms | |
Essential | no |
Product | spore coat protein (inner) |
Function | resistance of the spore |
Gene expression levels in SubtiExpress: cotD | |
MW, pI | 8 kDa, 7.373 |
Gene length, protein length | 225 bp, 75 aa |
Immediate neighbours | ypsA, yprB |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
GerE regulon, SigK regulon, SpoIIID regulon
The gene
Basic information
- Locus tag: BSU22200
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: nhaC Na(+)/H(+) antiporter family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P07791
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: cotD (according to DBTBS)
- Regulatory mechanism:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References