Difference between revisions of "YphA"

From SubtiWiki
Jump to: navigation, search
Line 35: Line 35:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 89: Line 85:
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
+
* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:''' cell membrane (according to Swiss-Prot)
+
* '''[[Localization]]:'''
 +
** cell membrane (according to Swiss-Prot)
  
 
=== Database entries ===
 
=== Database entries ===
Line 111: Line 108:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yphA_2392751_2393350_-1 yphA] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yphA_2392751_2393350_-1 yphA] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigF]] {{PubMed|15699190,8759874}}
+
* '''[[Sigma factor]]:''' [[SigF]] {{PubMed|15699190,8759874}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 19:10, 18 June 2013

  • Description: unknown

Gene name yphA
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yphA
MW, pI 22 kDa, 9.252
Gene length, protein length 597 bp, 199 aa
Immediate neighbours seaA, ypzI
Sequences Protein DNA DNA_with_flanks
Genetic context
YphA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YphA expression.png















Categories containing this gene/protein

sporulation proteins, membrane proteins

This gene is a member of the following regulons

SigF regulon

The gene

Basic information

  • Locus tag: BSU22860

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed early during sporulation in the forespore (SigF) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

A Decatur, R Losick
Identification of additional genes under the control of the transcription factor sigma F of Bacillus subtilis.
J Bacteriol: 1996, 178(16);5039-41
[PubMed:8759874] [WorldCat.org] [DOI] (P p)