Difference between revisions of "RnmV"
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabE]]'', ''[[ksgA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabE]]'', ''[[ksgA]]'' | ||
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| − | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00410 | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00410 DNA_with_flanks] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:rnmV_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:rnmV_context.gif]] | ||
Revision as of 09:09, 14 May 2013
- Description: RNase M5
| Gene name | rnmV |
| Synonyms | yabF |
| Essential | no |
| Product | endoribonuclease M5 |
| Function | 5S ribosomal RNA maturation |
| Gene expression levels in SubtiExpress: rnmV | |
| MW, pI | 20 kDa, 6.681 |
| Gene length, protein length | 558 bp, 186 aa |
| Immediate neighbours | yabE, ksgA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU00410
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains: N-terminal part: Toprim domain PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cytoplasm (homogeneous) PubMed
Database entries
- Structure:
- UniProt: P37547
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Ciaran Condon, IBPC, Paris, France Homepage
Your additional remarks
References
Jean-Christophe Meile, Ling Juan Wu, S Dusko Ehrlich, Jeff Errington, Philippe Noirot
Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.
Proteomics: 2006, 6(7);2135-46
[PubMed:16479537]
[WorldCat.org]
[DOI]
(P p)
Frédéric Allemand, Nathalie Mathy, Dominique Brechemier-Baey, Ciarán Condon
The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member.
Nucleic Acids Res: 2005, 33(13);4368-76
[PubMed:16077031]
[WorldCat.org]
[DOI]
(I e)
Ciarán Condon, Jordi Rourera, Dominique Brechemier-Baey, Harald Putzer
Ribonuclease M5 has few, if any, mRNA substrates in Bacillus subtilis.
J Bacteriol: 2002, 184(10);2845-9
[PubMed:11976317]
[WorldCat.org]
[DOI]
(P p)
C Condon, D Brechemier-Baey, B Beltchev, M Grunberg-Manago, H Putzer
Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: mature 5S rRNA is dispensable for ribosome function.
RNA: 2001, 7(2);242-53
[PubMed:11233981]
[WorldCat.org]
[DOI]
(P p)
