Difference between revisions of "CydC"
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|style="background:#ABCDEF;" align="center"|'''Function''' || required for expression of cytochrome bd | |style="background:#ABCDEF;" align="center"|'''Function''' || required for expression of cytochrome bd | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38740 cydC] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CydC CydC] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CydC CydC] | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cydD]]'', ''[[cydB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cydD]]'', ''[[cydB]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38740 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38740 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38740 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:cydC_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:cydC_context.gif]] | ||
Revision as of 14:12, 13 May 2013
- Description: ABC transporter required for expression of cytochrome bd (ATP-binding protein)
| Gene name | cydC |
| Synonyms | yxkM |
| Essential | no |
| Product | ABC transporter (ATP-binding protein) |
| Function | required for expression of cytochrome bd |
| Gene expression levels in SubtiExpress: cydC | |
| Interactions involving this protein in SubtInteract: CydC | |
| MW, pI | 62 kDa, 8.511 |
| Gene length, protein length | 1701 bp, 567 aa |
| Immediate neighbours | cydD, cydB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
ABC transporters, respiration, membrane proteins
This gene is a member of the following regulons
CcpA regulon, ResD regulon, Rex regulon
The gene
Basic information
- Locus tag: BSU38740
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains: has both a membrane-spanning and an ATP-binding domain PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane PubMed
Database entries
- Structure:
- UniProt: P94366
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Ankita Puri-Taneja, Matthew Schau, Yinghua Chen, F Marion Hulett
Regulators of the Bacillus subtilis cydABCD operon: identification of a negative regulator, CcpA, and a positive regulator, ResD.
J Bacteriol: 2007, 189(9);3348-58
[PubMed:17322317]
[WorldCat.org]
[DOI]
(P p)
Jonas T Larsson, Annika Rogstam, Claes von Wachenfeldt
Coordinated patterns of cytochrome bd and lactate dehydrogenase expression in Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 10);3323-3335
[PubMed:16207915]
[WorldCat.org]
[DOI]
(P p)
Matthew Schau, Yinghua Chen, F Marion Hulett
Bacillus subtilis YdiH is a direct negative regulator of the cydABCD operon.
J Bacteriol: 2004, 186(14);4585-95
[PubMed:15231791]
[WorldCat.org]
[DOI]
(P p)
Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453]
[WorldCat.org]
[DOI]
(P p)
L Winstedt, K Yoshida, Y Fujita, C von Wachenfeldt
Cytochrome bd biosynthesis in Bacillus subtilis: characterization of the cydABCD operon.
J Bacteriol: 1998, 180(24);6571-80
[PubMed:9852001]
[WorldCat.org]
[DOI]
(P p)
