Difference between revisions of "ThiO"

From SubtiWiki
Jump to: navigation, search
Line 32: Line 32:
  
 
<br/><br/><br/><br/><br/><br/>
 
<br/><br/><br/><br/><br/><br/>
 +
 +
= [[Categories]] containing this gene/protein =
 +
{{SubtiWiki category|[[biosynthesis of cofactors]]}}
 +
 +
= This gene is a member of the following [[regulons]] =
 +
{{SubtiWiki regulon|[[Thi-box]]}}
  
 
=The gene=
 
=The gene=
Line 51: Line 57:
  
  
= Categories containing this gene/protein =
+
 
{{SubtiWiki category|[[biosynthesis of cofactors]]}}
 
 
=The protein=
 
=The protein=
  

Revision as of 18:32, 8 December 2010

  • Description: FAD-dependent glycine oxidase

Gene name thiO
Synonyms goxB, yjbR
Essential no
Product glycine oxidase
Function biosynthesis of thiamine
Metabolic function and regulation of this protein in SubtiPathways:
Thiamin
MW, pI 40 kDa, 5.898
Gene length, protein length 1107 bp, 369 aa
Immediate neighbours tenI, thiS
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
GoxB context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

biosynthesis of cofactors

This gene is a member of the following regulons

Thi-box

The gene

Basic information

  • Locus tag: BSU11670

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Glycine + H2O + O2 = glyoxylate + NH3 + H2O2 (according to Swiss-Prot)
  • Protein family: DAMOX/DASOX family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions: the FAD-containing holoenzyme is a homotetramer PubMed
  • Localization: cytoplasm (according to Swiss-Prot)

Database entries

  • Structure: 1NG3 (complex with acetyl-glycine), 1RYI
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Christopher T Jurgenson, Tadhg P Begley, Steven E Ealick
The structural and biochemical foundations of thiamin biosynthesis.
Annu Rev Biochem: 2009, 78;569-603
[PubMed:19348578] [WorldCat.org] [DOI] (I p)

T P Begley, D M Downs, S E Ealick, F W McLafferty, A P Van Loon, S Taylor, N Campobasso, H J Chiu, C Kinsland, J J Reddick, J Xi
Thiamin biosynthesis in prokaryotes.
Arch Microbiol: 1999, 171(5);293-300
[PubMed:10382260] [WorldCat.org] [DOI] (P p)

Original publications