Difference between revisions of "YtsJ"

From SubtiWiki
Jump to: navigation, search
Line 92: Line 92:
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''[[ytsJ]]'' {{PubMed|9387221}}
  
 
* '''Sigma factor:'''  
 
* '''Sigma factor:'''  
Line 124: Line 124:
 
=References=
 
=References=
  
<pubmed>16479537, 16788182 ,12949160 </pubmed>
+
<pubmed>16479537, 16788182 ,12949160 9387221 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 22:00, 18 December 2009

  • Description: malic enzyme

Gene name ytsJ
Synonyms
Essential no
Product NAD-dependent malate dehydrogenase
Function malate utilization
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 43 kDa, 5.046
Gene length, protein length 1230 bp, 410 aa
Immediate neighbours accD, dnaE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtsJ context.gif
This image was kindly provided by SubtiList







The gene

Basic information

  • Locus tag: BSU29220

Phenotypes of a mutant

Poor growth with malate as single carbon source PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: (S)-malate + NAD+ = pyruvate + CO2 + NADH (according to Swiss-Prot) malate <--> pyruvate
  • Protein family: malic enzymes family (according to Swiss-Prot)
  • Paralogous protein(s): MleA

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: Cytoplasm (Homogeneous) PubMed cytoplasm protein PubMed

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant: GP612 (spc), available in Stülke lab
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Stephane Aymerich, Microbiology and Molecular Genetics, INRA Paris-Grignon, France

Your additional remarks

References