YxjF - Revision history

134.76.38.147 at 15:10, 2 April 2014

2014-04-02T15:10:31Z

134.76.70.252 at 14:56, 16 May 2013

2013-05-16T14:56:45Z

134.76.70.252 at 11:38, 14 May 2013

2013-05-14T11:38:45Z

134.76.70.252 at 14:13, 13 May 2013

2013-05-13T14:13:23Z

134.76.70.252 at 17:26, 7 August 2012

2012-08-07T17:26:35Z

134.76.70.252 at 12:16, 23 April 2012

2012-04-23T12:16:40Z

134.76.70.252 at 09:43, 17 April 2012

2012-04-17T09:43:09Z

Lflorez at 00:51, 9 December 2010

2010-12-09T00:51:59Z

Lflorez at 00:17, 1 December 2010

2010-12-01T00:17:41Z

Jstuelk at 10:31, 7 February 2010

2010-02-07T10:31:51Z

← Older revision		Revision as of 15:10, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' sporulation protein, similar to gluconate 5-dehydrogenase <br/><br/>~~	+	{{#bank: YxjF}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yxjF''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38970 yxjF]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 27 kDa, 7.89~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 771 bp, 257 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yxjG]]'', ''[[scoB]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38970 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38970 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38970 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yxjF_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxjF_4000539_4001312_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yxjF_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38970]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}},~~
−	~~{{SubtiWiki category\|[[poorly characterized/ putative enzymes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[CcpA regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU38970
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxjC-scoAB-yxjF.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11155]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''Interactions:'''
−
−	* '''Localization:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P42317 P42317]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU38970]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[yxjC]]-[[scoA]]-[[scoB]]-[[yxjF]]'' {{PubMed\|10746760}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxjF_4000539_4001312_-1 yxjF] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[SigE]] {{PubMed\|12662922}}
−
−	* '''Regulation:'''
−	** repressed by glucose (4-fold) ([[CcpA]]) {{PubMed\|12850135,10666464}}
−	** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed\|12662922}}
−
−	* '''Regulatory mechanism:'''
−	** [[CcpA]]: transcription repression {{PubMed\|12850135,10666464}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:''' GP1112 (spc), available in [[Stülke]] lab
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>16672620,10666464 ,12850135,10746760 12662922 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxjF_4000539_4001312_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yxjF_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxjF_4000539_4001312_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yxjF_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38970]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxjG]]'', ''[[scoB]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38970 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38970 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38970 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38970 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38970 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38970 DNA_with_flanks]
 |-
 |-

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU38970 yxjF]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38970 yxjF]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 7.89
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxjG]]'', ''[[scoB]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15923&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38970 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38970 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38970 Advanced_DNA]
 |-
 |-

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 7.89

@@ Line 26: / Line 26: @@
 |colspan="2" | '''Genetic context''' <br/> [[Image:yxjF_context.gif]]
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
 |}
 __TOC__
 <br/><br/>

@@ Line 101: / Line 101: @@
 * '''Operon:''' ''[[yxjC]]-[[scoA]]-[[scoB]]-[[yxjF]]'' {{PubMed|10746760}}
-* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|12662922}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxjF_4000539_4001312_-1 yxjF] {{PubMed|22383849}}
 * '''Regulation:'''

@@ Line 32: / Line 32: @@
 <br/><br/>
 =The gene=
@@ Line 51: / Line 59: @@
-= Categories containing this gene/protein =
 =The protein=

← Older revision		Revision as of 00:17, 1 December 2010
Line 50:		Line 50:


		+
		+	= Categories containing this gene/protein =
		+	{{SubtiWiki category\|[[sporulation proteins]]}},
		+	{{SubtiWiki category\|[[poorly characterized/ putative enzymes]]}}
	=The protein=		=The protein=

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to gluconate 5-dehydrogenase <br/><br/>
+* '''Description:''' sporulation protein, similar to gluconate 5-dehydrogenase <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 89: / Line 89: @@
 =Expression and regulation=
-* '''Operon:''' ''[[yxjC]]-[[scoA]]-[[scoB]]-[[yxjF]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/10746760 PubMed]
+* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|12662922}}
-* '''[[Sigma factor]]:'''
+* '''Regulation:'''
+** repressed by glucose (4-fold) ([[CcpA]]) {{PubMed|12850135,10666464}}
-* '''Regulation:''' repressed by glucose (4-fold) [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed]
+** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed|12662922}}
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
@@ Line 120: / Line 122: @@
 =References=
-<pubmed>16672620,,12850135, </pubmed>
+<pubmed>16672620,10666464 ,12850135,10746760 12662922 </pubmed>
 [[Category:Protein-coding genes]]