YxeK - Revision history

134.76.70.252 at 10:07, 17 April 2014

2014-04-17T10:07:02Z

134.76.38.147 at 15:12, 2 April 2014

2014-04-02T15:12:40Z

Jstuelk at 12:04, 18 August 2013

2013-08-18T12:04:20Z

Jstuelk at 11:49, 18 August 2013

2013-08-18T11:49:57Z

Jstuelk: /* References */

2013-07-13T16:40:52Z

‎References

134.76.70.252 at 14:58, 16 May 2013

2013-05-16T14:58:41Z

134.76.70.252 at 11:41, 14 May 2013

2013-05-14T11:41:04Z

134.76.70.252 at 14:15, 13 May 2013

2013-05-13T14:15:35Z

Aklewing: /* Categories containing this gene/protein */

2013-05-08T13:40:38Z

‎Categories containing this gene/protein

Aklewing: /* Categories containing this gene/protein */

2013-05-08T13:40:23Z

‎Categories containing this gene/protein

← Older revision		Revision as of 10:07, 17 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' similar to monooxygenase, the ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' operon may be implicated in the utilization of a modified cysteine variant <br/><br/>~~	+	{{#bank: YxeK}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yxeK''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| sulphur metabolism~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39520 yxeK]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 49 kDa, 5.668~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1323 bp, 441 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yxeL]]'', ''[[yxeJ]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39520 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yxeK_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeK_4060818_4062143_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yxeK_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39520]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[poorly characterized/ putative enzymes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[CymR regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU39520
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU39520&redirect=T BSU39520]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxeKLMNOPQ.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11887]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' ntaA/snaA/soxA(dszA) monooxygenase family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[CmoJ]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU39520&redirect=T BSU39520]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P54950 P54950]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU39520]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' {{PubMed\|10746760}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeK_4060818_4062143_-1 yxeK] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[SigA]] {{PubMed\|16513748}}
−
−	* '''Regulation:'''
−	** repressed in the presence of cysteine ([[CymR]]) {{PubMed\|16513748}}
−
−	* '''Regulatory mechanism:'''
−	** [[CymR]]: transcription repression {{PubMed\|16513748}}
−
−	* '''Additional information:'''
−	** the amount of the mRNA is substantially decreased upon depletion of [[Rny\|RNase Y]] {{PubMed\|21815947}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>10746760,,16513748, 21815947</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 52: / Line 52: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxeKLMNOPQ.html]
@@ Line 89: / Line 90: @@
 === Database entries ===
 * '''Structure:'''

← Older revision		Revision as of 12:04, 18 August 2013
Line 1:		Line 1:
−	* '''Description:''' similar to monooxygenase <br/><br/>	+	* '''Description:''' similar to monooxygenase, the ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' operon may be implicated in the utilization of a modified cysteine variant <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 74: / Line 70: @@
 * '''Protein family:''' ntaA/snaA/soxA(dszA) monooxygenase family (according to Swiss-Prot)
-* '''Paralogous protein(s):''' [[YtnJ]]
+* '''Paralogous protein(s):''' [[CmoJ]]
 === Extended information on the protein ===
@@ Line 105: / Line 101: @@
 =Expression and regulation=
-* '''Operon:''' ''[[yxeK]]-[[yxeL]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[yxeP]]-[[yxeQ]]'' {{PubMed|10746760}}
+* '''Operon:''' ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' {{PubMed|10746760}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeK_4060818_4062143_-1 yxeK] {{PubMed|22383849}}

@@ Line 139: / Line 139: @@
 =References=
- <big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
+<pubmed>10746760,,16513748, 21815947</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeK_4060818_4062143_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yxeK_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeK_4060818_4062143_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yxeK_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39520]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxeL]]'', ''[[yxeJ]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39520 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39520 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yxeK_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || sulphur metabolism
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU39520 yxeK]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39520 yxeK]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 49 kDa, 5.668
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxeL]]'', ''[[yxeJ]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15988&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39520 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yxeK_context.gif]]

@@ Line 42: / Line 42: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}},
+{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}}
 = This gene is a member of the following [[regulons]] =