YwrB - Revision history

134.76.38.147 at 14:59, 2 April 2014

2014-04-02T14:59:17Z

134.76.70.252 at 09:30, 12 November 2013

2013-11-12T09:30:22Z

Jstuelk at 09:14, 2 September 2013

2013-09-02T09:14:59Z

Jstuelk: Jstuelk moved page ChrS to YwrB over redirect: revert

2013-09-02T09:02:35Z

Jstuelk moved page ChrS to YwrB over redirect: revert

Jstuelk: Jstuelk moved page YwrB to ChrS

2013-09-02T09:02:07Z

Jstuelk moved page YwrB to ChrS

134.76.70.252 at 14:46, 16 May 2013

2013-05-16T14:46:06Z

134.76.70.252 at 11:27, 14 May 2013

2013-05-14T11:27:36Z

134.76.70.252 at 14:02, 13 May 2013

2013-05-13T14:02:13Z

Jstuelk: /* References */

2012-08-21T17:11:39Z

‎References

Jstuelk at 17:10, 21 August 2012

2012-08-21T17:10:24Z

← Older revision		Revision as of 14:59, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' subunit of chromate exporter (with [[YwrA]])<br/><br/>~~	+	{{#bank: YwrB}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''ywrB''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''chr3N ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| chromate exporter~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| chromate detoxification~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36120 ywrB]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YwrB YwrB]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 20 kDa, 9.944~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 591 bp, 197 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[chrS]]'', ''[[ywrA]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36120 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ywrB_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywrB_3721415_3722008_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:ywrB_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36120]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transporters/ other]]}},~~
−	~~{{SubtiWiki category\|[[resistance against toxic metals]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[ChrS regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU36120
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12521]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[YwrA]]-[[YwrB]] {{PubMed\|19581367}}
−
−	* '''[[Localization]]:'''
−	** cell membrane {{PubMed\|22900751}}
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O05216 O05216]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU36120]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[chrS]]-[[ywrB]]-[[ywrA]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywrB_3721415_3722008_1 ywrB] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|23989926}}
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−	** [[ChrS]]: transcription repression {{PubMed\|23989926}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 19581367 22383849 22900751 23989926</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36120 ywrB]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YwrB YwrB]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YwrB YwrB]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 9.944

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 591 bp, 197 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywrC]]'', ''[[ywrA]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[chrS]]'', ''[[ywrA]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36120 DNA_with_flanks]
@@ Line 45: / Line 45: @@
 = This gene is a member of the following [[regulons]] =
+{{SubtiWiki regulon|[[ChrS regulon]]}}
 =The gene=
@@ Line 105: / Line 105: @@
 =Expression and regulation=
-* '''Operon:''' ''[[ywrB]]-[[ywrA]]'' {{PubMed|19581367}}
+* '''Operon:''' ''[[chrS]]-[[ywrB]]-[[ywrA]]'' {{PubMed|22383849}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywrB_3721415_3722008_1 ywrB] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|23989926}}
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
@@ Line 136: / Line 137: @@
 =References=
-'''Additional publications:'''  {{PubMed|22900751}}
+<pubmed> 19581367 22383849 22900751 23989926</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywrB_3721415_3722008_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ywrB_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywrB_3721415_3722008_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ywrB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36120]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywrC]]'', ''[[ywrA]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36120 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36120 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ywrB_context.gif]]

← Older revision	Revision as of 09:02, 2 September 2013
(No difference)

@@ Line 1: / Line 1: @@
-* '''Description:''' chromate transport out via proton antiport <br/><br/>
+* '''Description:''' subunit of chromate exporter (with [[YwrA]])<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 6: / Line 6: @@
 |''ywrB''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''chr3N ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || chromate transport out via proton antiport
+|style="background:#ABCDEF;" align="center"| '''Product''' || chromate exporter
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || chromate export
+|style="background:#ABCDEF;" align="center"|'''Function''' || chromate detoxification
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU36120 ywrB]
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 66: / Line 62: @@
 === Additional information===
 =The protein=
@@ Line 92: / Line 85: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:''' [[YwrA]]-[[YwrB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19581367 PubMed]
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:''' cell membrane (according to Swiss-Prot)
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 110: / Line 105: @@
 =Expression and regulation=
-* '''Operon:'''
+* '''Operon:''' ''[[ywrB]]-[[ywrA]]'' {{PubMed|19581367}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywrB_3721415_3722008_1 ywrB] {{PubMed|22383849}}
@@ Line 141: / Line 136: @@
 =References=
-<pubmed> 19581367 </pubmed>
+<pubmed> 19581367 22900751 </pubmed>
 [[Category:Protein-coding genes]]