YwcA - Revision history

Jstuelk: /* References */

2015-06-12T10:46:58Z

‎References

Jstuelk at 09:32, 12 June 2015

2015-06-12T09:32:51Z

Atkovacs: /* References */

2015-06-11T14:10:12Z

‎References

Atkovacs at 14:07, 11 June 2015

2015-06-11T14:07:09Z

Atkovacs: /* Phenotypes of a mutant */

2015-06-09T13:22:08Z

‎Phenotypes of a mutant

Atkovacs at 13:21, 9 June 2015

2015-06-09T13:21:10Z

Atkovacs: /* Basic information/ Evolution */

2015-06-09T13:14:12Z

‎Basic information/ Evolution

134.76.70.252 at 11:54, 8 April 2014

2014-04-08T11:54:44Z

134.76.38.147 at 15:08, 2 April 2014

2014-04-02T15:08:00Z

Jstuelk at 12:27, 28 November 2013

2013-11-28T12:27:14Z

← Older revision		Revision as of 10:46, 12 June 2015
Line 1:		Line 1:
−	* '''Description:~~''' similar to Na+-dependent acetate symporter <br/><br/>~~	+	{{#bank: YwcA}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''ywcA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ipa-31r ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38240 ywcA]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=YwcA YwcA]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 54 kDa, 7.201~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1548 bp, 516 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ywcB]]'', ''[[ywbO]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38240 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38240 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38240 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ywcA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywcA_3924225_3925766_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:ywcA_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38240]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transporters/ other]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}},~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU38240
−
−	~~===Phenotypes of a mutant ===~~
−
−	** ''[[ywcB]]-[[ywcA]]'' mutant has slightly reduced acetic acid transport {{PubMed\|26060272}}
−	** ''[[ywcB]]-[[ywcA]]'' mutant shows earlier pellicle biofilm formation {{PubMed\|26060272}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU38240&redirect=T BSU38240]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10577]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** the protein is involved in acetate transport {{PubMed\|26060272}}
−	** the protein is not involved in proline transport {{PubMed\|24142252}}
−
−	* '''Protein family:''' solute:sodium symporter family (SSS family)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU38240&redirect=T BSU38240]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P39599 P39599]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU38240]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:'''
−	** ''[[slrA]]-[[ywcB]]-[[ywcA]]''
−	** ''[[ywcB]]-[[ywcA]]''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywcA_3924225_3925766_1 ywcA] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−	** ''[[ywcB]]'': [[SigE]] {{PubMed\|15699190}}
−
−	* '''Regulation:''' expressed during sporulation ([[SigE]]) {{PubMed\|15699190}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** available in [[Erhard Bremer]]'s lab {{PubMed\|24142252}}
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 26060272 15699190 24142252</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to Na+-dependent symport <br/><br/>
+* '''Description:''' similar to Na+-dependent acetate symporter <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 55: / Line 55: @@
 ===Phenotypes of a mutant ===
-** ''ywcBA'' mutant has slightly reduced acetic acid transport {{PubMed|26060272}}
+** ''[[ywcB]]-[[ywcA]]'' mutant has slightly reduced acetic acid transport {{PubMed|26060272}}
-** ''ywcBA'' mutant shows earlier pellicle biofilm formation {{PubMed|26060272}}
+** ''[[ywcB]]-[[ywcA]]'' mutant shows earlier pellicle biofilm formation {{PubMed|26060272}}
 === Database entries ===
@@ Line 66: / Line 66: @@
 === Additional information===
 =The protein=

@@ Line 147: / Line 147: @@
 =References=
-<pubmed> 15699190 24142252</pubmed>
+<pubmed> 26060272 15699190 24142252</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 55: / Line 55: @@
 ===Phenotypes of a mutant ===
-** ''ywcBA'' mutant has slightly reduced acetic acid transport (Chen et al)
+** ''ywcBA'' mutant has slightly reduced acetic acid transport {{PubMed|26060272}}
-** ''ywcBA'' mutant shows earlier pellicle biofilm formation (Chen et al)
+** ''ywcBA'' mutant shows earlier pellicle biofilm formation {{PubMed|26060272}}
 === Database entries ===
@@ Line 75: / Line 75: @@
 * '''Catalyzed reaction/ biological activity:'''
-** the protein is involved in acetate transport (Chen et al)
+** the protein is involved in acetate transport {{PubMed|26060272}}
 ** the protein is not involved in proline transport  {{PubMed|24142252}}

@@ Line 55: / Line 55: @@
 ===Phenotypes of a mutant ===
-** ''ywcBA'' mutant has slightly reduced in acetate transport (Chen et al)
+** ''ywcBA'' mutant has slightly reduced acetic acid transport (Chen et al)
 ** ''ywcBA'' mutant shows earlier pellicle biofilm formation (Chen et al)

← Older revision		Revision as of 13:21, 9 June 2015
Line 54:		Line 54:

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===
		+
		+	** ''ywcBA'' mutant has slightly reduced in acetate transport (Chen et al)
		+	** ''ywcBA'' mutant shows earlier pellicle biofilm formation (Chen et al)

	=== Database entries ===		=== Database entries ===

← Older revision		Revision as of 13:14, 9 June 2015
Line 72:		Line 72:

	* '''Catalyzed reaction/ biological activity:'''		* '''Catalyzed reaction/ biological activity:'''
		+	** the protein is involved in acetate transport (Chen et al)
	** the protein is not involved in proline transport {{PubMed\|24142252}}		** the protein is not involved in proline transport {{PubMed\|24142252}}

@@ Line 15: / Line 15: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38240 ywcA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 7.201

@@ Line 54: / Line 54: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 92: / Line 93: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 73: / Line 69: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:'''
+* '''Protein family:''' solute:sodium symporter family (SSS family)
 * '''Paralogous protein(s):'''
@@ Line 125: / Line 122: @@
 * '''Mutant:'''
 * '''Expression vector:'''
@@ Line 141: / Line 139: @@
 =References=
-<pubmed> 15699190 </pubmed>
+<pubmed> 15699190 24142252</pubmed>
 [[Category:Protein-coding genes]]