YvrL - Revision history

134.76.38.147 at 14:44, 2 April 2014

2014-04-02T14:44:18Z

134.76.70.252 at 14:32, 16 May 2013

2013-05-16T14:32:48Z

134.76.70.252 at 11:15, 14 May 2013

2013-05-14T11:15:13Z

134.76.70.252 at 13:49, 13 May 2013

2013-05-13T13:49:56Z

134.76.70.252 at 15:51, 7 August 2012

2012-08-07T15:51:52Z

134.76.70.252 at 09:02, 23 April 2012

2012-04-23T09:02:14Z

134.76.70.252 at 06:25, 17 April 2012

2012-04-17T06:25:59Z

Jstuelk: /* Extended information on the protein */

2011-11-02T09:37:11Z

‎Extended information on the protein

Lflorez at 23:18, 8 December 2010

2010-12-08T23:18:27Z

Lflorez at 23:52, 30 November 2010

2010-11-30T23:52:40Z

← Older revision		Revision as of 14:44, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' anti-Sig([[YvrI]]-[[YvrHa]]) <br/><br/>~~	+	{{#bank: YvrL}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yvrL''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| anti-Sig([[YvrI]]-[[YvrHa]])~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| control of Sig([[YvrI]]-[[YvrHa]]) activity~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33250 yvrL]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 15 kDa, 9.427~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 408 bp, 136 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[oxdC]]'', ''[[yvrN]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33250 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yvrL_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvrL_3411684_3412094_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yvrL_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33250]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sigma factors and their control]]}},~~
−	~~{{SubtiWiki category\|[[acid stress proteins (controlled by YvrI-YvrHa)]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[YvrI-YvrHa regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU33250
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG14149]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O34686 O34686]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU33250]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[oxdC]]-[[yvrL]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvrL_3411684_3412094_1 yvrL] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[YvrI]]-[[YvrH]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
−
−	* '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−	~~[[John Helmann]], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>18573182,,19047353,19047353, </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvrL_3411684_3412094_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yvrL_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvrL_3411684_3412094_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yvrL_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33250]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[oxdC]]'', ''[[yvrN]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33250 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33250 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yvrL_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || control of Sig([[YvrI]]-[[YvrHa]]) activity
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU33250 yvrL]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33250 yvrL]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 15 kDa, 9.427
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[oxdC]]'', ''[[yvrN]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15315&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33250 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yvrL_context.gif]]

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || control of Sig([[YvrI]]-[[YvrHa]]) activity
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 15 kDa, 9.427

@@ Line 100: / Line 100: @@
 * '''Operon:''' ''[[oxdC]]-[[yvrL]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
-* '''[[Sigma factor]]:''' [[YvrI]]-[[YvrH]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvrL_3411684_3412094_1 yvrL] {{PubMed|22383849}}
 * '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed]

@@ Line 80: / Line 80: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:''' cell membrane (according to Swiss-Prot)
+* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
 === Database entries ===

@@ Line 30: / Line 30: @@
 <br/><br/>
 =The gene=
@@ Line 49: / Line 57: @@
-= Categories containing this gene/protein =
 =The protein=

← Older revision		Revision as of 23:52, 30 November 2010
Line 48:		Line 48:


		+
		+	= Categories containing this gene/protein =
		+	{{SubtiWiki category\|[[sigma factors and their control]]}},
		+	{{SubtiWiki category\|[[acid stress proteins (controlled by YvrI-YvrHa)]]}},
		+	{{SubtiWiki category\|[[membrane proteins]]}}
	=The protein=		=The protein=