YukD - Revision history

Jstuelk at 06:55, 8 May 2014

2014-05-08T06:55:32Z

134.76.38.147 at 14:39, 2 April 2014

2014-04-02T14:39:24Z

Jstuelk: /* References */

2013-08-30T14:17:58Z

‎References

Jstuelk: /* References */

2013-08-30T14:12:03Z

‎References

Jstuelk: /* Expression and regulation */

2013-07-26T11:31:06Z

‎Expression and regulation

Jstuelk: /* This gene is a member of the following regulons */

2013-07-26T11:23:28Z

‎This gene is a member of the following regulons

Jstuelk: /* Expression and regulation */

2013-07-26T11:18:02Z

‎Expression and regulation

Jstuelk: /* References */

2013-07-26T11:09:55Z

‎References

Jstuelk: /* Categories containing this gene/protein */

2013-07-26T11:06:09Z

‎Categories containing this gene/protein

Jstuelk at 11:00, 26 July 2013

2013-07-26T11:00:20Z

← Older revision		Revision as of 06:55, 8 May 2014
Line 1:		Line 1:
−	* '''Description:~~''' Ubiquitin-like protein, part of the type VII [[protein secretion]] system [[~~YukD~~]]-[[YukC]]-[[YukB]]-[[YueB]]-[[YueC]], putative bacteriocin <br/><br/>~~	+	{{#bank: YukD}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yukD''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| ubiquitin-like protein, part of the type VII [[protein secretion]] system, putative bacteriocin~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| export of [[YukE]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31900 yukD]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 8 kDa, 6.311~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 237 bp, 79 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yukC]]'', ''[[yukE]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31900 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yukD_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yukD_3275832_3276071_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yukD_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31900]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[biosynthesis of antibacterial compounds]]}},~~
−	~~{{SubtiWiki category\|[[protein secretion]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[DegU regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU31900
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31900&redirect=T BSU31900]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12377]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31900&redirect=T BSU31900]
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2BPS 2BPS]
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P71071 P71071]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU31900]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[yukE]]-[[yukD]]-[[yukC]]-[[yukB]]-[[yueB]]-[[yueC]]'' {{PubMed\|22383849,15576783}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yukD_3275832_3276071_-1 yukD] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|22383849}}
−
−	* '''Regulation:'''
−	** not expressed in the lab strain 168, due to lack of [[DegU]]-P {{PubMed\|23861817}}
−	** expressed in the stationary phase {{PubMed\|23861817}}
−
−	* '''Regulatory mechanism:'''
−	** [[DegU]]-P: transcription activation {{PubMed\|23861817}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed> 19155186 11973144 </pubmed>~~
−	~~== Original publications ==~~
−	~~<pubmed>15576783, 16845009 22383849 23861817 15978580 </pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 53: / Line 53: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 90: / Line 91: @@
 === Database entries ===
 * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2BPS 2BPS]

@@ Line 137: / Line 137: @@
 =References=
 <pubmed>15576783, 16845009 22383849 23861817 15978580 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 137: / Line 137: @@
 =References=
-<pubmed>15576783, 16845009 22383849 23861817 </pubmed>
+<pubmed>15576783, 16845009 22383849 23861817 15978580 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 11:31, 26 July 2013
Line 110:		Line 110:

	* '''Regulation:'''		* '''Regulation:'''
		+	** not expressed in the lab strain 168, due to lack of [[DegU]]-P {{PubMed\|23861817}}
	** expressed in the stationary phase {{PubMed\|23861817}}		** expressed in the stationary phase {{PubMed\|23861817}}

@@ Line 42: / Line 42: @@
 = This gene is a member of the following [[regulons]] =
+{{SubtiWiki regulon|[[DegU regulon]]}}
 =The gene=

@@ Line 110: / Line 110: @@
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
 * '''Additional information:'''

@@ Line 38: / Line 38: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[biosynthesis of antibacterial compounds]]}}
+{{SubtiWiki category|[[biosynthesis of antibacterial compounds]]}},
 = This gene is a member of the following [[regulons]] =

@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || ubiquitin-like protein, putative bacteriocin
+|style="background:#ABCDEF;" align="center"| '''Product''' || ubiquitin-like protein, part of the type VII [[protein secretion]] system, putative bacteriocin
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || export of [[YukE]]