YukB - Revision history

Jstuelk: /* Original publications */

2014-07-01T07:42:48Z

‎Original publications

Jstuelk at 06:53, 8 May 2014

2014-05-08T06:53:50Z

134.76.70.252 at 10:12, 17 April 2014

2014-04-17T10:12:06Z

134.76.38.147 at 14:39, 2 April 2014

2014-04-02T14:39:18Z

Jstuelk: /* References */

2013-08-30T14:19:11Z

‎References

Jstuelk: /* Expression and regulation */

2013-07-26T11:31:56Z

‎Expression and regulation

Jstuelk: /* This gene is a member of the following regulons */

2013-07-26T11:23:42Z

‎This gene is a member of the following regulons

Jstuelk: /* Expression and regulation */

2013-07-26T11:17:54Z

‎Expression and regulation

Jstuelk: /* References */

2013-07-26T11:10:10Z

‎References

Jstuelk: /* Extended information on the protein */

2013-07-26T11:07:55Z

‎Extended information on the protein

← Older revision		Revision as of 07:42, 1 July 2014
Line 1:		Line 1:
−	* '''Description:~~''' membrane FtsK/SpoIIIE-like ATPase, part of the type VII [[protein secretion]] system [[YukD]]-[[YukC]]-[[~~YukB~~]]-[[YueB]]-[[YueC]] <br/><br/>~~	+	{{#bank: YukB}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yukB''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| membrane FtsK/SpoIIIE-like ATPase, part of the type VII [[protein secretion]] system~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| export of [[YukE]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31875 yukB]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 172 kDa, 5.462~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 4485 bp, 1495 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yueB]]'', ''[[yukC]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31875 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31875 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31875 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yukB_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yukB_3269914_3274401_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yukB_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31875]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[protein secretion]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[DegU regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU31875
−
−	~~===Phenotypes of a mutant ===~~
−	* loss of secretion of [[YukE]] {{PubMed\|24798022}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31875&redirect=T BSU31875]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12375]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** membrane (according to SwissProt) {{PubMed\|23861817}}
−	** cytoplasm (Homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31875&redirect=T BSU31875]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/C0SPA7 C0SPA7]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU31880]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[yukE]]-[[yukD]]-[[yukC]]-[[yukB]]-[[yueB]]-[[yueC]]'' {{PubMed\|22383849,15576783}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yukB_3269914_3274401_-1 yukB] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|22383849}}
−
−	* '''Regulation:'''
−	** not expressed in the lab strain 168, due to lack of [[DegU]]-P {{PubMed\|23861817}}
−	** expressed in the stationary phase {{PubMed\|23861817}}
−
−	* '''Regulatory mechanism:'''
−	** [[DegU]]-P: transcription activation {{PubMed\|23861817}}
−
−	* '''Additional information:'''
−	** number of protein molecules per cell (complex medium with amino acids, without glucose): 1354 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed> 19155186 11973144 </pubmed>~~
−	~~== Original publications ==~~
−	~~<pubmed>16479537 15576783 22383849 23861817 24798022 24696501</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 53: / Line 53: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 62: / Line 63: @@
 === Additional information===
@@ Line 147: / Line 146: @@
 <pubmed> 19155186 11973144 </pubmed>
 == Original publications ==
-<pubmed>16479537 15576783 22383849 23861817 </pubmed>
+<pubmed>16479537 15576783 22383849 23861817 24798022 24696501</pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 10:12, 17 April 2014
Line 123:		Line 123:

	* '''Additional information:'''		* '''Additional information:'''
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 1354 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 55: / Line 55: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 94: / Line 95: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 141: / Line 141: @@
 =References=
+== Reviews ==
 <pubmed>16479537 15576783 22383849 23861817 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 11:31, 26 July 2013
Line 114:		Line 114:

	* '''Regulation:'''		* '''Regulation:'''
		+	** not expressed in the lab strain 168, due to lack of [[DegU]]-P {{PubMed\|23861817}}
	** expressed in the stationary phase {{PubMed\|23861817}}		** expressed in the stationary phase {{PubMed\|23861817}}

@@ Line 44: / Line 44: @@
 = This gene is a member of the following [[regulons]] =
+{{SubtiWiki regulon|[[DegU regulon]]}}
 =The gene=

@@ Line 114: / Line 114: @@
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
 * '''Additional information:'''

@@ Line 89: / Line 89: @@
 * '''[[SubtInteract|Interactions]]:'''
-* '''[[Localization]]:''' Cytoplasm (Homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
+* '''[[Localization]]:'''
 === Database entries ===