YuiG - Revision history

134.76.38.147 at 14:39, 2 April 2014

2014-04-02T14:39:51Z

Jstuelk at 11:57, 10 January 2014

2014-01-10T11:57:55Z

Jstuelk at 17:41, 27 December 2013

2013-12-27T17:41:05Z

Jstuelk: /* Reviews */

2013-12-27T17:28:21Z

‎Reviews

134.76.70.252 at 09:17, 12 November 2013

2013-11-12T09:17:43Z

Jstuelk at 19:27, 13 July 2013

2013-07-13T19:27:04Z

Jstuelk at 19:25, 13 July 2013

2013-07-13T19:25:39Z

Jstuelk at 19:13, 13 July 2013

2013-07-13T19:13:20Z

Jstuelk at 18:59, 13 July 2013

2013-07-13T18:59:35Z

134.76.70.252 at 14:28, 16 May 2013

2013-05-16T14:28:38Z

← Older revision		Revision as of 14:39, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' putative S protein of a second biotin [[ECF transporter]] <br/><br/>~~	+	{{#bank: YuiG}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yuiG''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| putative S protein of an [[ECF transporter]]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32030 yuiG]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YuiG YuiG]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 21 kDa, 10.625~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 600 bp, 200 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yuiH]]'', ''[[yuiF]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU32030 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU32030 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU32030 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yuiG_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioYB_3294270_3294872_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yuiG_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32030]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}},~~
−	~~{{SubtiWiki category\|[[ECF transporter]]}},~~
−	~~{{SubtiWiki category\|[[poorly characterized/ putative enzymes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[BirA regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU32030
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13972]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[YbaF]]-[[YuiG]] {{PubMed\|20497229}}
−
−	* '''[[Localization]]:'''
−	** membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
−
−	~~=== Database entries ===~~
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=4DVE 4DVE] (BioY from ''Lactococcus lactis'', 27% identity, 59% similarity) {{PubMed\|22891302}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O32104 O32104]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU32030]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioYB_3294270_3294872_1 yuiG] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** repressed in the presence of biotin ([[BirA]]) {{PubMed\|11717296}}
−
−	* '''Regulatory mechanism:'''
−	** [[BirA]]: transcription repression {{PubMed\|11717296}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed> 20497229 22574898 24362466 </pubmed>~~
−
−	~~==Original publications==~~
−	~~<pubmed>18763711,22891302 11717296</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 62: / Line 62: @@
 === Additional information===
 =The protein=
@@ Line 142: / Line 139: @@
 =References=
 ==Reviews==
-<pubmed> 20497229 22574898</pubmed>
+<pubmed> 20497229 22574898 24362466 </pubmed>
 ==Original publications==

@@ Line 80: / Line 80: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 96: / Line 96: @@
 === Database entries ===
-* '''Structure:'''
+* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=4DVE 4DVE] (BioY from ''Lactococcus lactis'', 27% identity, 59% similarity) {{PubMed|22891302}}
 * '''UniProt:''' [http://www.uniprot.org/uniprot/O32104 O32104]
@@ Line 112: / Line 112: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioYB_3294270_3294872_1 yuiG] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''
@@ Line 145: / Line 145: @@
 ==Original publications==
-<pubmed>18763711, 11717296</pubmed>
+<pubmed>18763711,22891302 11717296</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 142: / Line 142: @@
 =References=
 ==Reviews==
-<pubmed> 20497229 </pubmed>
+<pubmed> 20497229 22574898</pubmed>
 ==Original publications==
 <pubmed>18763711, 11717296</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32030 yuiG]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YuiG YuiG]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YuiG YuiG]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 10.625

@@ Line 1: / Line 1: @@
-* '''Description:''' putative S protein of an [[ECF transporter]] of unknown specificity <br/><br/>
+* '''Description:''' putative S protein of a second biotin [[ECF transporter]] <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 43: / Line 43: @@
 = This gene is a member of the following [[regulons]] =
+{{SubtiWiki regulon|[[BirA regulon]]}}
 =The gene=
@@ Line 111: / Line 111: @@
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
@@ Line 136: / Line 138: @@
 =References=
-<pubmed>18763711, </pubmed>
+<pubmed>18763711, 11717296</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to biotin metabolism <br/><br/>
+* '''Description:''' putative S protein of an [[ECF transporter]] of unknown specificity <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || putative S protein of an [[ECF transporter]]
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[membrane proteins]]}},
 {{SubtiWiki category|[[poorly characterized/ putative enzymes]]}}

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioYB_3294270_3294872_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yuiG_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioYB_3294270_3294872_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yuiG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32030]]
 |-
 |}