YueB - Revision history

Jstuelk at 06:55, 8 May 2014

2014-05-08T06:55:11Z

134.76.38.147 at 14:39, 2 April 2014

2014-04-02T14:39:15Z

Jstuelk: /* References */

2013-08-30T14:19:26Z

‎References

Jstuelk: /* Expression and regulation */

2013-07-26T11:32:20Z

‎Expression and regulation

Jstuelk: /* This gene is a member of the following regulons */

2013-07-26T11:23:51Z

‎This gene is a member of the following regulons

Jstuelk: /* Expression and regulation */

2013-07-26T11:17:51Z

‎Expression and regulation

Jstuelk: /* References */

2013-07-26T11:10:19Z

‎References

Jstuelk: /* Extended information on the protein */

2013-07-26T11:09:14Z

‎Extended information on the protein

Jstuelk: /* Categories containing this gene/protein */

2013-07-26T11:03:20Z

‎Categories containing this gene/protein

Jstuelk at 11:00, 26 July 2013

2013-07-26T11:00:33Z

← Older revision		Revision as of 06:55, 8 May 2014
Line 1:		Line 1:
−	* '''Description:~~''' membrane protein, part of the type VII [[protein secretion]] system [[YukD]]-[[YukC]]-[[YukB]]-[[~~YueB~~]]-[[YueC]], receptor for phage SPPI <br/><br/>~~	+	{{#bank: YueB}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yueB''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| part of the type VII [[protein secretion]] system, receptor for phage SPPI~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| export of [[YukE]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31860 yueB]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 119 kDa, 4.302~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 3228 bp, 1076 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yueC]]'', ''[[yukB]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31860 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yueB_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yueB_3266687_3269917_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yueB_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31860]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[phage-related functions]]}},~~
−	~~{{SubtiWiki category\|[[protein secretion]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[DegU regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU31860
−
−	~~===Phenotypes of a mutant ===~~
−	* resistance to phage SPPI {{PubMed\|15576783}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31860&redirect=T BSU31860]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13957]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** receptor for phage SPP1 {{PubMed\|15576783}}
−	** required for depolarization of the cytoplasmic membrane upon binding of phage SPP1 {{PubMed\|22154073}}
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[YueB]] is a member of a suspected group of hubs proteins that were suggested to be involved in a large number of [[SubtInteract\|interactions]] {{PubMed\|21630458}}
−
−	* '''[[Localization]]:'''
−	** cell membrane {{PubMed\|15576783,23861817}}, localizes preferentially to the cell poles {{PubMed\|21705600}}
−	** exposed to the surface {{PubMed\|16481324}}
−	** cytoplasm (homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31860&redirect=T BSU31860]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O32101 O32101]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU31860]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[yukE]]-[[yukD]]-[[yukC]]-[[yukB]]-[[yueB]]-[[yueC]]'' {{PubMed\|22383849,15576783}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yueB_3266687_3269917_-1 yueB] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|22383849}}
−
−	* '''Regulation:'''
−	** not expressed in the lab strain 168, due to lack of [[DegU]]-P {{PubMed\|23861817}}
−	** expressed in the stationary phase {{PubMed\|23861817}}
−
−	* '''Regulatory mechanism:'''
−	** [[DegU]]-P: transcription activation {{PubMed\|23861817}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed> 19155186 11973144 </pubmed>~~
−	~~== Original publications ==~~
−	~~<pubmed>16479537 16481324 15576783 21630458 18487323 17611601 22383849 22171743,21705600,22154073 23861817 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 55: / Line 55: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 95: / Line 96: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 142: / Line 142: @@
 =References=
 <pubmed>16479537 16481324 15576783 21630458 18487323 17611601 22383849 22171743,21705600,22154073 23861817 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 11:32, 26 July 2013
Line 115:		Line 115:

	* '''Regulation:'''		* '''Regulation:'''
		+	** not expressed in the lab strain 168, due to lack of [[DegU]]-P {{PubMed\|23861817}}
	** expressed in the stationary phase {{PubMed\|23861817}}		** expressed in the stationary phase {{PubMed\|23861817}}

@@ Line 43: / Line 43: @@
 = This gene is a member of the following [[regulons]] =
+{{SubtiWiki regulon|[[DegU regulon]]}}
 =The gene=

@@ Line 115: / Line 115: @@
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
 * '''Additional information:'''

@@ Line 90: / Line 90: @@
 * '''[[Localization]]:'''
-** cell membrane {{PubMed|15576783}}, localizes preferentially to the cell poles {{PubMed|21705600}}
+** cell membrane {{PubMed|15576783,23861817}}, localizes preferentially to the cell poles {{PubMed|21705600}}
 ** exposed to the surface {{PubMed|16481324}}
 ** cytoplasm (homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]

@@ Line 39: / Line 39: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[phage-related functions]]}},
 {{SubtiWiki category|[[membrane proteins]]}}

@@ Line 1: / Line 1: @@
-* '''Description:''' receptor for phage SPPI <br/><br/>
+* '''Description:''' membrane protein, part of the type VII [[protein secretion]] system [[YukD]]-[[YukC]]-[[YukB]]-[[YueB]]-[[YueC]], receptor for phage SPPI <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || receptor for phage SPPI
+|style="background:#ABCDEF;" align="center"| '''Product''' || part of the type VII [[protein secretion]] system, receptor for phage SPPI
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || export of [[YukE]]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31860 yueB]