YqbN/2 - Revision history

134.76.38.147 at 14:17, 2 April 2014

2014-04-02T14:17:58Z

134.76.70.252 at 14:00, 16 May 2013

2013-05-16T14:00:22Z

134.76.70.252 at 13:22, 13 May 2013

2013-05-13T13:22:52Z

Umaeder at 16:29, 26 November 2012

2012-11-26T16:29:00Z

134.76.70.252 at 14:06, 7 August 2012

2012-08-07T14:06:00Z

134.76.70.252 at 09:22, 20 April 2012

2012-04-20T09:22:25Z

134.76.70.252 at 11:53, 16 April 2012

2012-04-16T11:53:34Z

Umaeder at 19:33, 10 February 2012

2012-02-10T19:33:11Z

Umaeder: /* Basic information */

2012-02-10T19:31:15Z

‎Basic information

Umaeder at 19:30, 10 February 2012

2012-02-10T19:30:26Z

← Older revision		Revision as of 14:17, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' similar to phage-related protein, part of the yqbN pseudogene <br~~/~~><br/>~~	+	{{#bank: YqbN/2}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yqbN/2''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26040 yqbN/2]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| - , -~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 438 bp, -~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yqbN/1]]'', ''[[txpA]]''~~
−	\|-
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/yqbN_nucleotide.txt Gene sequence (+200bp) ]'''~~
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/yqbN_protein.txt Protein sequence]'''~~
−	\|-
−	~~\|colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" \| '''Caution: The sequence for this gene in SubtiList contains errors~~
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yqbN_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqbN_2677657_2678094_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yqbN/2_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26040]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/><br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[Skin element]]}},~~
−	~~{{SubtiWiki category\|[[pseudogenes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU26040
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11285]
−
−	~~=== Additional information===~~
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3DFD 3DFD]
−
−	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P45930 P45930]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU26040]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqbN_2677657_2678094_-1 yqbN/2] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~[[Category:Pseudogenes]]~~

@@ Line 30: / Line 30: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqbN_2677657_2678094_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yqbN/2_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqbN_2677657_2678094_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yqbN/2_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26040]]
 |-
 |}

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU26040 yqbN/2]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26040 yqbN/2]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || - , -

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU26040 yqbN/2]
 |-
-|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 4.519
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || - , -
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 447 bp, 149 aa
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 438 bp, -
 |-
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqbN/1]]'', ''[[txpA]]''

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 4.519

@@ Line 27: / Line 27: @@
 |colspan="2" | '''Genetic context''' <br/> [[Image:yqbN_context.gif]]
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
 |}
 __TOC__
 <br/><br/><br/><br/>

@@ Line 101: / Line 101: @@
 * '''Operon:'''
-* '''[[Sigma factor]]:'''
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqbN_2677657_2678094_-1 yqbN/2] {{PubMed|22383849}}
 * '''Regulation:'''
@@ Line 107: / Line 109: @@
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
 =Biological materials =

@@ Line 4: / Line 4: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yqbN''
+|''yqbN/2''
 |-
 |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''

@@ Line 45: / Line 45: @@
 === Basic information ===
-* '''Locus tag:'''
+* '''Locus tag:''' BSU26040
 ===Phenotypes of a mutant ===

← Older revision		Revision as of 19:30, 10 February 2012
Line 1:		Line 1:
−	* '''Description:''' similar to phage-related protein <br/><br/>	+	* '''Description:''' similar to phage-related protein, part of the yqbN pseudogene <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"