YoyC - Revision history

134.76.38.147 at 13:55, 2 April 2014

2014-04-02T13:55:32Z

Jstuelk: /* Expression and regulation */

2013-08-01T12:24:22Z

‎Expression and regulation

Jstuelk at 12:23, 1 August 2013

2013-08-01T12:23:41Z

134.76.70.252 at 13:34, 16 May 2013

2013-05-16T13:34:37Z

134.76.70.252 at 10:26, 14 May 2013

2013-05-14T10:26:02Z

134.76.70.252 at 13:01, 13 May 2013

2013-05-13T13:01:15Z

Jstuelk at 19:27, 6 May 2013

2013-05-06T19:27:53Z

Awiechert at 08:39, 16 November 2012

2012-11-16T08:39:19Z

134.76.70.252 at 10:32, 7 August 2012

2012-08-07T10:32:00Z

134.76.70.252 at 11:04, 19 April 2012

2012-04-19T11:04:52Z

← Older revision		Revision as of 13:55, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' unknown <br/><br/>~~	+	{{#bank: YoyC}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yoyC''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU19479 yoyC]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 11 kDa, 5.910~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 276 bp, 92 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yojF]], [[yojE]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU19479 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU19479 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU19479 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yoyC_context.gif]]~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yoyC_2122672_2122950_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yoyC_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU19479]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[proteins of unknown function]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[Spx regulon]]}}~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU19479
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' no entry
−
−	~~=== Additional information===~~
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O68260 O68260]
−
−	* '''KEGG entry:'''
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−	** ''[[yojE]]-[[yoyC]]-[[yojF]]-[[bshB2]]'' (minor transcript) {{PubMed\|23894131}}
−	** ''[[yoyC]]-[[yojF]]-[[bshB2]]'' (major transcript) {{PubMed\|23894131,20308541}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yoyC_2122672_2122950_-1 yoyC] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−	** ''[[yojE]]'': [[SigA]] {{PubMed\|23894131}}
−	** ''[[yoyC]]'': [[SigA]] {{PubMed\|23894131}}
−
−	* '''Regulation:'''
−	** ''[[yoyC]]'': induced by diamide stess (thiol depletion) ([[Spx]]) {{PubMed\|23894131}}
−
−	* '''Regulatory mechanism:'''
−	** [[Spx]]: transcription activation {{PubMed\|23894131}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Operon and expression==~~
−	~~<pubmed> 20308541 23894131</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 116: / Line 116: @@
 * '''Regulatory mechanism:'''
 ** [[Spx]]: transcription activation {{PubMed|23894131}}
 * '''Additional information:'''

@@ Line 40: / Line 40: @@
 = This gene is a member of the following [[regulons]] =
@@ Line 100: / Line 101: @@
 =Expression and regulation=
-* '''Operon:''' ''[[yoyC]]-[[yojF]]-[[bshB2]]''  {{PubMed|20308541}}
+* '''Operon:'''
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yoyC_2122672_2122950_-1 yoyC] {{PubMed|22383849}}
 * '''[[Sigma factor]]:'''
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
@@ Line 132: / Line 140: @@
 =References=
 ==Operon and expression==
-<pubmed> 20308541 </pubmed>
+<pubmed> 20308541 23894131</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 26: / Line 26: @@
 |colspan="2" | '''Genetic context''' <br/> [[Image:yoyC_context.gif]]
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yoyC_2122672_2122950_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yoyC_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yoyC_2122672_2122950_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yoyC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU19479]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yojF]], [[yojE]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU19479 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU19479 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU19479 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU19479 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU19479 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU19479 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yoyC_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU19479 yoyC]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU19479 yoyC]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 5.910
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yojF]], [[yojE]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [https://www.genoscope.cns.fr/agc/mage/wwwpkgdb/Tool/seq.php?id=3126723&wwwpkgdb=161818163a7851c916065c67bbfbb6e4&nocache=1c4dba172a063d87ff86313f73f6caa9&dir=&wwwpkgdb=161818163a7851c916065c67bbfbb6e4 sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU19479 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU19479 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU19479 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yoyC_context.gif]]

@@ Line 34: / Line 34: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 86: / Line 82: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 108: / Line 104: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yoyC_2122672_2122950_-1 yoyC] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''