YjcL - Revision history

134.76.38.147 at 13:27, 2 April 2014

2014-04-02T13:27:06Z

Jstuelk at 11:19, 9 August 2013

2013-08-09T11:19:59Z

Fabian Commichau: /* Biological materials */

2013-08-06T12:33:54Z

‎Biological materials

Fabian Commichau: /* Biological materials */

2013-07-12T07:32:57Z

‎Biological materials

Kgunka: /* Biological materials */

2013-07-11T13:48:59Z

‎Biological materials

134.76.70.252 at 13:00, 16 May 2013

2013-05-16T13:00:49Z

134.76.70.252 at 09:56, 14 May 2013

2013-05-14T09:56:40Z

134.76.70.252 at 12:34, 13 May 2013

2013-05-13T12:34:29Z

Jstuelk: /* Extended information on the protein */

2012-10-21T19:44:20Z

‎Extended information on the protein

Raphael2215 at 09:22, 9 August 2012

2012-08-09T09:22:39Z

← Older revision		Revision as of 13:27, 2 April 2014
Line 1:		Line 1:
−	* '''Description:''' unknown <br/><br/>	+	{{#bank: YjcL}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yjcL''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11900 yjcL]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 43 kDa, 9.381~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1188 bp, 396 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yjcK]]'', ''[[trnSL-Val2]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11900 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yjcL_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcL_1261426_1262616_-1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:yjcL_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11900]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[proteins of unknown function]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU11900
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13165]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O31634 O31634]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU11900]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[yjcL]]-[[yjcK]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcL_1261426_1262616_-1 yjcL] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** BP138 (''[[yjcL]]''::''spc'') available in [[Fabian Commichau]]'s lab
−	** BP139 (''[[yjcL]]-[[yjcK]]''::''ermC''), available in [[Fabian Commichau]]'s lab
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>22383849 </pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 34: / Line 34: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 105: / Line 101: @@
 =Expression and regulation=
-* '''Operon:'''
+* '''Operon:''' ''[[yjcL]]-[[yjcK]]'' {{PubMed|22383849}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcL_1261426_1262616_-1 yjcL] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''
@@ Line 121: / Line 117: @@
 * '''Mutant:'''
 ** BP138 (''[[yjcL]]''::''spc'') available in [[Fabian Commichau]]'s lab
-** BP139 (''yjcKL''::''ermC''), available in [[Fabian Commichau]]'s lab
+** BP139 (''[[yjcL]]-[[yjcK]]''::''ermC''), available in [[Fabian Commichau]]'s lab
 * '''Expression vector:'''
@@ Line 138: / Line 134: @@
 =References=
+<pubmed>22383849 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 121: / Line 121: @@
 * '''Mutant:'''
 ** BP138 (''[[yjcL]]''::''spc'') available in [[Fabian Commichau]]'s lab
 * '''Expression vector:'''

@@ Line 120: / Line 120: @@
 * '''Mutant:'''
-** BP138 (spc) available in [[Fabian Commichau]]'s lab
+** BP138 (''[[yjcL]]''::''spc'') available in [[Fabian Commichau]]'s lab
 * '''Expression vector:'''

← Older revision		Revision as of 13:48, 11 July 2013
Line 120:		Line 120:

	* '''Mutant:'''		* '''Mutant:'''
		+	** BP138 (spc) available in [[Fabian Commichau]]'s lab

	* '''Expression vector:'''		* '''Expression vector:'''

@@ Line 26: / Line 26: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcL_1261426_1262616_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yjcL_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcL_1261426_1262616_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yjcL_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11900]]
 |-
 |}

@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yjcK]]'', ''[[trnSL-Val2]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11900 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11900 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yjcL_context.gif]]

@@ Line 13: / Line 13: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU11900 yjcL]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11900 yjcL]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 9.381
@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yjcK]]'', ''[[trnSL-Val2]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13047&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11900 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yjcL_context.gif]]

@@ Line 87: / Line 87: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===

@@ Line 1: / Line 1: @@
+* '''Description:''' unknown <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-