YhfU - Revision history

Jstuelk: /* Original publications */

2015-07-03T16:50:54Z

‎Original publications

134.76.70.252 at 11:51, 8 April 2014

2014-04-08T11:51:03Z

134.76.38.147 at 13:20, 2 April 2014

2014-04-02T13:20:54Z

Jstuelk at 11:57, 10 January 2014

2014-01-10T11:57:13Z

Jstuelk: /* Original publications */

2013-12-27T17:41:50Z

‎Original publications

Jstuelk: /* Database entries */

2013-12-27T17:41:20Z

‎Database entries

Jstuelk: /* Database entries */

2013-12-27T17:39:47Z

‎Database entries

Jstuelk: /* Reviews */

2013-12-27T17:27:28Z

‎Reviews

134.76.70.252 at 15:56, 11 November 2013

2013-11-11T15:56:26Z

Jstuelk at 19:27, 13 July 2013

2013-07-13T19:27:36Z

← Older revision		Revision as of 16:50, 3 July 2015
Line 1:		Line 1:
−	* '''Description:''' S protein of biotin [[ECF transporter]]<br/><br/>	+	{{#bank: YhfU}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yhfU''~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''bioY ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| S protein of biotin [[ECF transporter]]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| uptake of biotin~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10370 yhfU]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YhfU ~~YhfU]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=YhfU YhfU]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 19 kDa, 10.681~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 558 bp, 186 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yhfT]]'', ''[[hemAT]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10370 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10370 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10370 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yhfU_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioY_1111925_1112485_-1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:yhfU_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10370]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[ECF transporter]]}},~~
−	~~{{SubtiWiki category\|[[biosynthesis of cofactors]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[BirA regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU10370
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU10370&redirect=T BSU10370]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13065]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' uptake of biotin {{PubMed\|17301237}}
−
−	* '''Protein family:''' bioY family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[YbaF]]-[[YhfU]] {{PubMed\|20497229}}
−
−	* '''[[Localization]]:'''
−	** membrane associated [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU10370&redirect=T BSU10370]
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=4DVE 4DVE] (BioY from ''Lactococcus lactis'', 35% identity, 71% similarity) {{PubMed\|22891302}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O07620 O07620]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU10370]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioY_1111925_1112485_-1 yhfU] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** repressed in the presence of biotin ([[BirA]]) {{PubMed\|11717296}}
−
−	* '''Regulatory mechanism:'''
−	** [[BirA]]: transcription repression {{PubMed\|11717296}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed>21437340, 20497229,22574898 24362466 </pubmed>~~
−
−	~~== Original publications ==~~
−	~~<pubmed>18763711, 17301237 11717296 22891302</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 16: / Line 16: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YhfU YhfU]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 10.681

@@ Line 55: / Line 55: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 91: / Line 92: @@
 === Database entries ===
 * '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=4DVE 4DVE] (BioY from ''Lactococcus lactis'', 35% identity, 71% similarity) {{PubMed|22891302}}

@@ Line 61: / Line 61: @@
 === Additional information===
 =The protein=
@@ Line 79: / Line 76: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 141: / Line 138: @@
 =References=
 == Reviews ==
-<pubmed>21437340, 20497229,22574898 </pubmed>
+<pubmed>21437340, 20497229,22574898 24362466 </pubmed>
 == Original publications ==

@@ Line 144: / Line 144: @@
 == Original publications ==
-<pubmed>18763711, 17301237 11717296</pubmed>
+<pubmed>18763711, 17301237 11717296 22891302</pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 17:41, 27 December 2013
Line 96:		Line 96:

	* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=4DVE 4DVE] (BioY from ''Lactococcus lactis'', 35% identity, 71% similarity) {{PubMed\|22891302}}		* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=4DVE 4DVE] (BioY from ''Lactococcus lactis'', 35% identity, 71% similarity) {{PubMed\|22891302}}
−

	* '''UniProt:''' [http://www.uniprot.org/uniprot/O07620 O07620]		* '''UniProt:''' [http://www.uniprot.org/uniprot/O07620 O07620]

@@ Line 15: / Line 15: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10370 yhfU]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YhfU YhfU]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YhfU YhfU]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 10.681

@@ Line 14: / Line 14: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10370 yhfU]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 10.681
@@ Line 86: / Line 88: @@
 * '''[[SubtInteract|Interactions]]:'''
 * '''[[Localization]]:'''