YfnI - Revision history

Jstuelk at 14:18, 19 August 2014

2014-08-19T14:18:10Z

134.76.70.252 at 10:04, 17 April 2014

2014-04-17T10:04:05Z

134.76.38.147 at 13:10, 2 April 2014

2014-04-02T13:10:31Z

Jstuelk at 18:07, 30 August 2013

2013-08-30T18:07:28Z

Jstuelk: /* References */

2013-08-13T18:06:37Z

‎References

Fmehne: /* Biological materials */

2013-08-13T16:14:36Z

‎Biological materials

Fmehne: /* Biological materials */

2013-08-13T16:14:17Z

‎Biological materials

Fmehne: /* Biological materials */

2013-08-13T16:04:13Z

‎Biological materials

134.76.70.252 at 12:45, 16 May 2013

2013-05-16T12:45:02Z

134.76.70.252 at 09:40, 14 May 2013

2013-05-14T09:40:58Z

← Older revision		Revision as of 14:18, 19 August 2014
Line 1:		Line 1:
−	* '''Description:''' polyglycerolphosphate lipoteichoic acid synthase, general stress protein, major secreted protein, required for survival at low temperature (4°C)<br/><br/>	+	{{#bank: YfnI}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yfnI''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yetP, ltaSA ''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Product''' \|\| minor lipoteichoic acid synthetase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| biosynthesis of lipoteichoic acid~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07260 yfnI]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 73 kDa, 5.951~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1917 bp, 639 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yetO]]'', ''[[yfnH]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07260 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07260 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07260 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yfnI_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ltaSA_796314_798233_1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:yfnI_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07260]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[cell wall synthesis]]}},~~
−	~~{{SubtiWiki category\|[[biosynthesis of cell wall components]]}},~~
−	~~{{SubtiWiki category\|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}},~~
−	~~{{SubtiWiki category\|[[phosphoproteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigM regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU07260
−
−	~~===Phenotypes of a mutant ===~~
−	* induction of [[SigM]] and [[SigX]] activities {{PubMed\|23103977}}
−	* more sensitive to nisin {{PubMed\|23980836}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07260&redirect=T BSU07260]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yfnI.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12980]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' LTA synthase family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[LtaS]], [[YqgS]], [[YvgJ]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:''' phosphorylation on (Thr-311 OR Ser-312) [http://www.ncbi.nlm.nih.gov/sites/entrez/17218307 PubMed]
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07260&redirect=T BSU07260]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/Q797B3 Q797B3]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU07260]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''yfnI'' (according to [http://dbtbs.hgc.jp/COG/prom/yfnI.html DBTBS])
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ltaSA_796314_798233_1 yfnI] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17434969 PubMed]
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−	** number of protein molecules per cell (minimal medium with glucose and ammonium): 65 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** SM-NB (''yfnI-spc''), available in [[Anne Galinier]]'s and [[Boris Görke]]'s labs
−	** GP1390 ''yfnI::spc'', available in [[Jörg Stülke]]'s lab
−	** GP1397 ''yfnI::ermC'', available in [[Jörg Stülke]]'s lab
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed> 21388439 21255102</pubmed>~~
−	~~==Original publications==~~
−	~~<pubmed>17434969, 18957862 17218307 19229300 21255105, 23103977 23980836</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

← Older revision		Revision as of 10:04, 17 April 2014
Line 120:		Line 120:

	* '''Additional information:'''		* '''Additional information:'''
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 65 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 56: / Line 56: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yfnI.html]
@@ Line 94: / Line 95: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 53: / Line 53: @@
 ===Phenotypes of a mutant ===
 * induction of [[SigM]] and [[SigX]] activities {{PubMed|23103977}}
 === Database entries ===
@@ Line 143: / Line 144: @@
 <pubmed> 21388439 21255102</pubmed>
 ==Original publications==
-<pubmed>17434969, 18957862 17218307 19229300 21255105, 23103977</pubmed>
+<pubmed>17434969, 18957862 17218307 19229300 21255105, 23103977 23980836</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 141: / Line 141: @@
 =References=
 ==Reviews==
-'''Additional reviews:''' {{PubMed|21255102}}
+<pubmed> 21388439 21255102</pubmed>
 ==Original publications==
-'''Additional publications:''' {{PubMed|23103977}}
+<pubmed>17434969, 18957862 17218307 19229300 21255105, 23103977</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 124: / Line 124: @@
 ** GP1390 ''yfnI::spc'', available in [[Jörg Stülke]]'s lab
 ** GP1397 ''yfnI::ermC'', available in [[Jörg Stülke]]'s lab
 * '''Expression vector:'''

@@ Line 122: / Line 122: @@
 * '''Mutant:'''
 ** SM-NB (''yfnI-spc''), available in [[Anne Galinier]]'s and [[Boris Görke]]'s labs
 * '''Expression vector:'''

@@ Line 26: / Line 26: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ltaSA_796314_798233_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yfnI_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ltaSA_796314_798233_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yfnI_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07260]]
 |-
 |}

@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yetO]]'', ''[[yfnH]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07260 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07260 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07260 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07260 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07260 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07260 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yfnI_context.gif]]